CN187892

Overview
NameCN187892
Unique NameCN187892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12199 contig Csv1_Contig12199:61..884. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN187892 vs. ExPASy Swiss-Prot
Match: SKI16_ARATH (F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.081e-31
Identity = 51/84 (60.71%), Postives = 59/84 (70.24%), Query Frame = -3 
Query:  485 RHWIIHAXXXXXXXXSGEAVIGMYPLLHPGQNEFFYQSCTHLPASPGSVRGSFTFVPGRLADPKGSPFEVVVAEFPLQRPDYIF 736
            RHW+I A        +GEAVIG YPLL  G+ EF Y+SC+  P + GS+ GSFTFVPG L DPKGS FEV V EFPL+ PDYIF
Sbjct:  353 RHWVIRADNEVIDNVNGEAVIGKYPLLQAGEEEFVYESCSSFPTTAGSIDGSFTFVPGSLRDPKGSQFEVKVVEFPLELPDYIF 436

HSP 2 Score: 44.669 bits (104), Expect = 8.081e-31
Identity = 18/26 (69.23%), Postives = 22/26 (84.62%), Query Frame = -2 
Query:  744 FAYQIRMSLLPEGCVINGMTFSSCQL 821
            +AY IRMSL+PEGC++NG   SSCQL
Sbjct:  325 YAYSIRMSLMPEGCILNGTHHSSCQL 350
The following BLAST results are available for this feature:
BLAST of CN187892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI16_ARATH8.081e-3160.71F-box protein SKIP16 OS=Arabidopsis thaliana GN=SK... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187892 ID=CN187892; Name=CN187892; organism=Citrus sinensis; type=EST; length=825bp
TTTTTTTAGTATCATCAACCACATTTTATAATATCATGTAAATGTTATAA
CAACATTACAACAGGCATTCATGTAGAAATATGCAAAACCATTATTAGCA
AAGTACCGACGAACCTTGCTCAAAGTTTAAAGAAAAAGAATCCAAGCAAG
GACTCGAGCAGTGATTTTTAACCCACCTACAAAGTGCACAAATTTATACA
AAAAGCTCTCAGTTGCAACCTGGGACCTTCACTCCGAACCACTGGATGTC
AGAGGCCCAGAGCAGAGGCCGGATTTTGGATGACAGTCCAGTGAAGCTGA
AAAAGCAAGGTGTCTGCAGTTACCCAAGCCAGGCTTATAGATGTAACACC
TGCTTCCTCCAGTTTGACACCTTCTGATGGTCTTTGGCCCAGTCATAATT
GAGCTAAGTTCACAAATGCAGATAATTTTACTATTCATTTACTAATTGAT
GACAAACATATAACAACCATGTAAACGGTTTTCAGAATATGTAGTCTGGG
CGTTGGAGGGGGAACTCTGCCACAACTACTTCAAATGGACTGCCTTTCGG
GTCCGCCAATCTGCCAGGTACAAACGTAAAAGAACCTCTGACAGAGCCTG
GAGAAGCTGGTAGATGTGTGCAACTCTGATAAAAAAATTCGTTCTGACCT
GGATGCAAAAGTGGATACATTCCAATCACAGCTTCTCCACTAACAACAGA
TACGACAACATTATTAGCATGGATTATCCAATGCCTACGTTTGCAGTTGA
CAAGAGCTGAAAGTCATTCCATTTATGACGCATCCTTCAGGCAGTAGAGA
CATGCGAATTTGATAAGCAAACAAG
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