EY665964

Overview
NameEY665964
Unique NameEY665964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665964 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.070e-80
Identity = 150/199 (75.38%), Postives = 164/199 (82.41%), Query Frame = 3 
Query:   54 METSTMGLSSS-FLRKAVKLAPSSNELSNGGRISKRKTGSKS--VSSGSPWYGPDRVKNLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEIIHCRWAMLGALGCVFPELLGRNGVKFSEAVWVKERAQIFSEGGLDYLGNPRLIHAQSILDIWACQVVLMRTVEG*RIAGWSLTQESEPMYPWCGIYPL 641
            M TSTM LSSS F  KAVKL+PSS+E++  GR++ RKT +K+   SSGSPWYGPDRVK LGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNRELE+IHCRWAMLGALGCVFPELL RNGVKF EAVW K  +QIFSEGGLDYLGNP L+HAQSIL IWACQVVLM  VEG RIAG  L +  +P+YP     PL
Sbjct:    1 MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPL 199
[Close]
BLAST of EY665964 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.826e-80
Identity = 149/199 (74.87%), Postives = 164/199 (82.41%), Query Frame = 3 
Query:   54 METSTMGLSS-SFLRKAVKLAPSSNELSNGGRISKRKTGSKS--VSSGSPWYGPDRVKNLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEIIHCRWAMLGALGCVFPELLGRNGVKFSEAVWVKERAQIFSEGGLDYLGNPRLIHAQSILDIWACQVVLMRTVEG*RIAGWSLTQESEPMYPWCGIYPL 641
            M  STM LSS SF  KAVKL+PSS+E++  G+++ RKT SK+  VSSGSPWYGPDRVK LGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNRELE+IHCRWAMLGALGCVFPELL RNGVKF EAVW K  +QIFSEGGLDYLGNP L+HAQSIL IWACQVVLM  VEG R+AG  L +  +P+YP     PL
Sbjct:    1 MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPL 199
[Close]
BLAST of EY665964 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.826e-80
Identity = 147/198 (74.24%), Postives = 162/198 (81.82%), Query Frame = 3 
Query:   54 METSTMGLSSSFLRKAVKLAPSSNELSNGGRISKRKTGSKS--VSSGSPWYGPDRVKNLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEIIHCRWAMLGALGCVFPELLGRNGVKFSEAVWVKERAQIFSEGGLDYLGNPRLIHAQSILDIWACQVVLMRTVEG*RIAGWSLTQESEPMYPWCGIYPL 641
            M  ST  LSS F  KAVKL+PSS+E++  G+++ RKT SK+  VSSGSPWYGPDRVK LGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNRELE+IHCRWAMLGALGCVFPELL RNGVKF EAVW K  +QIFSEGGLDYLGNP L+HAQSIL IWACQVVLM  VEG R+AG  L +  +P+YP     PL
Sbjct:    1 MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPL 198
[Close]
BLAST of EY665964 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 5.312e-80
Identity = 146/198 (73.74%), Postives = 162/198 (81.82%), Query Frame = 3 
Query:   54 METSTMGLSSSFLRKAVKLAPSSNELSNGGRISKRKTGSKS--VSSGSPWYGPDRVKNLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEIIHCRWAMLGALGCVFPELLGRNGVKFSEAVWVKERAQIFSEGGLDYLGNPRLIHAQSILDIWACQVVLMRTVEG*RIAGWSLTQESEPMYPWCGIYPL 641
            M  ST  LSS F  KAVKL+PSS+E++  G+++ RKT +K+  VSSGSPWYGPDRVK LGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNRELE+IHCRWAMLGALGCVFPELL RNGVKF EAVW K  +QIFSEGGLDYLGNP L+HAQSIL IWACQVVLM  VEG R+AG  L +  +P+YP     PL
Sbjct:    1 MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPL 198
[Close]
BLAST of EY665964 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 4.497e-79
Identity = 146/197 (74.11%), Postives = 160/197 (81.22%), Query Frame = 3 
Query:   54 METSTMGLSS-SFLRKAVKLAPSSNELSNGGRISKRKTGSKSVSSGSPWYGPDRVKNLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEIIHCRWAMLGALGCVFPELLGRNGVKFSEAVWVKERAQIFSEGGLDYLGNPRLIHAQSILDIWACQVVLMRTVEG*RIAGWSLTQESEPMYPWCGIYPL 641
            M  +TM LSS SF  +AVKL+PS++E+S  GRI+ RK  +KS  S SPWYGPDRVK LGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNRELE+IHCRWAMLGALGCVFPELL RNGVKF EAVW K  +QIFSEGGLDYLGNP L+HAQSIL IWACQVVLM  VEG RIAG  L +  +P+YP     PL
Sbjct:    1 MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPL 197
[Close]
BLAST of EY665964 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 4.497e-79
Identity = 146/199 (73.37%), Postives = 164/199 (82.41%), Query Frame = 3 
Query:   54 METSTMGLSSS-FLRKAVKLAPSSNELSNGGRISKRKTGSKS--VSSGSPWYGPDRVKNLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEIIHCRWAMLGALGCVFPELLGRNGVKFSEAVWVKERAQIFSEGGLDYLGNPRLIHAQSILDIWACQVVLMRTVEG*RIAGWSLTQESEPMYPWCGIYPL 641
            M  +TM LSSS F  KAVKL+PSS+E++  G+++ RKT +K+  +SSGSPWYGPDRVK LGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNRELE+IHCRWAMLGALGCVFPELL RNGVKF EAVW K  +QIFSEGGLDYLGNP L+HAQSIL IWACQVVLM  VEG R+AG  L +  +P+YP     PL
Sbjct:    1 MAAATMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPL 199
[Close]
BLAST of EY665964 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 4.497e-79
Identity = 144/197 (73.10%), Postives = 161/197 (81.73%), Query Frame = 3 
Query:   54 METSTMGLSS-SFLRKAVKLAPSSNELSNGGRISKRKTGSKSVSSGSPWYGPDRVKNLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEIIHCRWAMLGALGCVFPELLGRNGVKFSEAVWVKERAQIFSEGGLDYLGNPRLIHAQSILDIWACQVVLMRTVEG*RIAGWSLTQESEPMYPWCGIYPL 641
            M  +TM LSS SF  +AVKL+PS+ E++  GR+S RKT +K V+S SPWYGPDRVK LGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNRELE+IHCRWAMLGALGCVFPELL RNGVKF EAVW K  +QIFSEGGLDYLGNP L+HAQSIL IWACQV+LM  VEG R+AG  L +  +P+YP     PL
Sbjct:    1 MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPL 197
[Close]
BLAST of EY665964 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.308e-78
Identity = 146/199 (73.37%), Postives = 162/199 (81.41%), Query Frame = 3 
Query:   54 METSTMGLSS-SFLRKAVKLAPSSNELSNGGRISKRKTGSKS--VSSGSPWYGPDRVKNLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEIIHCRWAMLGALGCVFPELLGRNGVKFSEAVWVKERAQIFSEGGLDYLGNPRLIHAQSILDIWACQVVLMRTVEG*RIAGWSLTQESEPMYPWCGIYPL 641
            M  STM LSS SF   AVKL+PSS+E++  G+   RKT +K+  VSSGSPWYGPDRVK LGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNRELE+IHCRWAMLGALGCVFPELL RNGVKF EAVW K  +QIFSEGGLDYLGNP L+HAQSIL IWACQVVLM  +EG R+AG  L + ++P+YP     PL
Sbjct:    1 MTASTMALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPL 199
[Close]
BLAST of EY665964 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.308e-78
Identity = 146/199 (73.37%), Postives = 163/199 (81.91%), Query Frame = 3 
Query:   54 METSTMGLSSS-FLRKAVKLAPSSNELSNGGRISKRKTGSKS--VSSGSPWYGPDRVKNLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEIIHCRWAMLGALGCVFPELLGRNGVKFSEAVWVKERAQIFSEGGLDYLGNPRLIHAQSILDIWACQVVLMRTVEG*RIAGWSLTQESEPMYPWCGIYPL 641
            M  STM LSSS F  KAVKL+PSS+E++  G+++ RKT SK+  VSS SPWYGP+RVK LGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNRELE+IHCRWAMLGALGCVFPELL RNGVKF EAVW K  +QIFS+GGLDYLGNP L+HAQSIL IWACQVVLM  VEG R+AG  L +  +P+YP     PL
Sbjct:    1 MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPL 199
[Close]
BLAST of EY665964 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 8.481e-78
Identity = 144/199 (72.36%), Postives = 161/199 (80.90%), Query Frame = 3 
Query:   54 METSTMGLSSS-FLRKAVKLAPSSNELSNGGRISKRKTGSKS--VSSGSPWYGPDRVKNLGPFSGEPPSYLTGEFPGDYGWDTAGLSADP*TFAKNRELEIIHCRWAMLGALGCVFPELLGRNGVKFSEAVWVKERAQIFSEGGLDYLGNPRLIHAQSILDIWACQVVLMRTVEG*RIAGWSLTQESEPMYPWCGIYPL 641
            M  +TM LSSS F  K VKL+PSS+E++  G+ + RKT +K+  VSSGSPWYGPDRVK LGPFSGE PSYLTGEFPGDYGWDTAGLSADP TFAKNRELE+IHCRWAMLGALGCVFPEL  RNGVKF EAVW+K  +QIFSEGGLDYLGNP L+HAQSIL IWACQV+LM  VEG R+AG  L    +P+YP     PL
Sbjct:    1 MAAATMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPL 199
The following BLAST results are available for this feature:
BLAST of EY665964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB2G_SOLLC1.070e-8075.38Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_TOBAC1.826e-8074.87Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC1.826e-8074.24Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB25_NICPL5.312e-8073.74Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB2B_SOLLC4.497e-7974.11Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB25_TOBAC4.497e-7973.37Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_TOBAC4.497e-7973.10Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB27_TOBAC1.308e-7873.37Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_NICPL1.308e-7873.37Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_PETSP8.481e-7872.36Chlorophyll a-b binding protein 22L, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-A10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665964 ID=EY665964; Name=EY665964; organism=Citrus sinensis; type=EST; length=855bp
CCACGCGTCCGCACTCAAACACTAAAGCTCACCACAACTCCGATCATTGT
AAAATGGAAACCTCGACCATGGGTCTCTCCTCATCATTCCTCCGAAAGGC
TGTGAAACTTGCCCCTTCAAGCAATGAGCTGAGCAATGGCGGCCGCATCT
CCAAGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTAC
GGCCCGGACAGAGTCAAGAACTTGGGTCCATTCTCTGGCGAGCCCCCAAG
CTACTTGACTGGTGAGTTCCCTGGTGACTACGGCTGGGACACTGCTGGGC
TTTCAGCTGACCCATAAACCTTTGCCAAGAACCGTGAACTCGAAATCATC
CACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCT
CTTGGGCCGCAACGGAGTCAAGTTCAGTGAAGCCGTGTGGGTCAAAGAGA
GGGCCCAAATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGA
CTGATCCACGCTCAGAGCATCTTGGACATCTGGGCTTGCCAGGTGGTCTT
GATGCGTACCGTTGAGGGCTAAAGAATTGCTGGATGGTCGCTCACTCAAG
AGAGTGAGCCAATGTACCCATGGTGTGGGATATATCCATTGGCGCCGGAT
TTTCACCAAAAGGGTAATGCCCGCCGCGATGGTCTGAAAGAACTAATGGG
AGCCCCCTATCCTCTCCAAGTGTGGAGTCGCGCCTAACACATTTGTCAAA
CCAGAAAAAACGCAAGAACATTTCGACGGACCCATGGACACAAACTGACA
AACAACTGACTAGACCTAGTAAACCACCCTCCACCCCCCACAGCGCGTAT
GAGAG
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