CN187883

Overview
NameCN187883
Unique NameCN187883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187883 vs. ExPASy Swiss-Prot
Match: HAL3A_ARATH (Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3A PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.978e-42
Identity = 79/94 (84.04%), Postives = 85/94 (90.43%), Query Frame = -2
Query:  251 IAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDG 532
            IAGGLCDNLLTCI+RAWDY KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLACGDYGNGAMAEPSLIYSTVRLF ES+     G
Sbjct:  113 IAGGLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEPSLIYSTVRLFWESQAHQQTG 206          
BLAST of CN187883 vs. ExPASy Swiss-Prot
Match: HAL3B_ARATH (Probable phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3B PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.292e-41
Identity = 77/88 (87.50%), Postives = 84/88 (95.45%), Query Frame = -2
Query:  269 IAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESR 532
            IAGGLCDNLLTCIVRAWDY+KPLFVAPAMNT MWNNPFTERHL+ +DELGI+LIPP+ K+LACGDYGNGAMAEPSLIYSTVRLF ES+
Sbjct:  105 IAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTLMWNNPFTERHLVLLDELGITLIPPIKKKLACGDYGNGAMAEPSLIYSTVRLFWESQ 192          
BLAST of CN187883 vs. ExPASy Swiss-Prot
Match: COAC_MOUSE (Phosphopantothenoylcysteine decarboxylase OS=Mus musculus GN=Ppcdc PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.465e-20
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = -2
Query:  287 IAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 532
            +A G+CDNLLTC++RAWD NKPL   PAMNT MW +P T + +  +   G   IP VSK+L CGD G GAMAE   I + V+
Sbjct:  111 VASGICDNLLTCVIRAWDLNKPLLFCPAMNTAMWEHPLTAQQVAQLKAFGYVEIPCVSKKLVCGDQGLGAMAEVETIVAKVQ 192          
BLAST of CN187883 vs. ExPASy Swiss-Prot
Match: COAC_HUMAN (Phosphopantothenoylcysteine decarboxylase OS=Homo sapiens GN=PPCDC PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.296e-18
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = -2
Query:  287 IAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVR 532
            +A G+CDNLLTC++RAWD +KPL   PAMNT MW +P T + +  +   G   IP V+K+L CGD G GAMAE   I   V+
Sbjct:  111 VASGICDNLLTCVMRAWDRSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVAKKLVCGDEGLGAMAEVGTIVDKVK 192          
BLAST of CN187883 vs. ExPASy Swiss-Prot
Match: COAC_DICDI (Putative phosphopantothenoylcysteine decarboxylase OS=Dictyostelium discoideum GN=ppcdc PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.115e-18
Identity = 46/103 (44.66%), Postives = 68/103 (66.02%), Query Frame = -2
Query:  290 AVLPPPAAADLIHLIS*LIAGGLCDNLLTCIVRAWDY-NKPLFVAPAMNTFMWNNPFTERHLMSIDEL--GISLIPPVSKRLACGDYGNGAMAE-PSLIYSTV 586
            ++L  P +A+ +  IS     GLCDNLLT ++RAWDY NK + +APAMNT MW NPFT +H+ ++  +   + +I P+ K+L CGD G GAM + P ++  T+
Sbjct:   95 SILISPCSANTLGKIS----NGLCDNLLTSLIRAWDYKNKSMILAPAMNTMMWENPFTFKHIETLKSISPNVFIIDPIEKKLFCGDIGMGAMEQVPKIVDFTI 193          
BLAST of CN187883 vs. ExPASy Swiss-Prot
Match: TYSY_SCHPO (Probable thymidylate synthase OS=Schizosaccharomyces pombe GN=SPAC15E1.04 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.386e-17
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = -2
Query:  314 IAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDEL--GISLIPPVSKRLACGDYGNGAMAE 532
            +A GLCDNLLT ++RAW   KP+ +APAMNT MW NP T+ HL +I  +      I P+ K LACGD G G MAE
Sbjct:  127 MANGLCDNLLTSLIRAWAPLKPILLAPAMNTLMWTNPITQEHLSAISRIYKNSEFIMPIEKVLACGDIGMGGMAE 201          
BLAST of CN187883 vs. ExPASy Swiss-Prot
Match: YKI8_YEAST (Uncharacterized protein YKL088W OS=Saccharomyces cerevisiae GN=YKL088W PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.011e-14
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = -2
Query:  242 IAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSI--DELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKVG 532
            +A G+C+NLLT ++R W    P+ +APAMNTFM+ NP T++HL S+  D   I ++ PV K L CGD G G M E + I   VR       ++ D + G
Sbjct:  414 LANGICNNLLTSVMRDWSPLTPVLIAPAMNTFMYINPMTKKHLTSLVQDYPFIQVLKPVEKVLICGDIGMGGMREWTDIVEIVRRRINEIRKARDEETG 512          
BLAST of CN187883 vs. ExPASy Swiss-Prot
Match: COAC_STRMU (Probable phosphopantothenoylcysteine decarboxylase OS=Streptococcus mutans GN=coaC PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = -2
Query:  290 VLPPPAAADLIHLIS*LIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTV 583
            +L P +A  L HL     A G  DN++T +  A     P F APAMNT M+ NP T+ ++  + + G   I P S  LACGD G+GA+A+   I   +
Sbjct:   83 LLAPASANTLAHL-----AHGFADNIVTSVALALPLEVPKFFAPAMNTKMYENPITQSNIALLKKFGYKEIQPKSSVLACGDVGSGALADLDTIIQKI 175          
The following BLAST results are available for this feature:
BLAST of CN187883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
HAL3A_ARATH2.978e-4284.04Phosphopantothenoylcysteine decarboxylase OS=Arabi... [more]
HAL3B_ARATH3.292e-4187.50Probable phosphopantothenoylcysteine decarboxylase... [more]
COAC_MOUSE5.465e-2053.66Phosphopantothenoylcysteine decarboxylase OS=Mus m... [more]
COAC_HUMAN2.296e-1851.22Phosphopantothenoylcysteine decarboxylase OS=Homo ... [more]
COAC_DICDI5.115e-1844.66Putative phosphopantothenoylcysteine decarboxylase... [more]
TYSY_SCHPO7.386e-1754.67Probable thymidylate synthase OS=Schizosaccharomyc... [more]
YKI8_YEAST2.011e-1442.42Uncharacterized protein YKL088W OS=Saccharomyces c... [more]
COAC_STRMU2.718e-1138.78Probable phosphopantothenoylcysteine decarboxylase... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187883 ID=CN187883; Name=CN187883; organism=Citrus sinensis; type=EST; length=791bp
TTTTTTTTTTTTTTTTTGATCAAAAGATTTTGTAAGTAAATATTTAATTG
CATGGGAACAGATTTGAGATGGCCTCACATTTCACTTCCAAAAGCTAACG
TGCAATATCGTACATGATTACAAAGTAGATCAGAACACTCTCAGATGACA
TATATAGTTTCAATATAGCGTTTGTCACTTAATCCGGGGACAATGGACTA
CAACAAGAAATTTAGCATTCCATGCAAACTGGACTGGATTAACCAACTTT
TCCATCGCCTGACTGGTTCCTTGACTCTGCGAACAGTCTCACAGTCGAGT
AGATCAATGAAGGTTCAGCCATGGCACCATTACCATAATCTCCGCAAGCC
AGCCTTTTGGAGACAGGTGGAATGAGAGAAATTCCAAGCTCATCAATTGA
CATAAGATGCCGCTCTGTGAATGGATTATTCCACATGAAAGTGTTCATAG
CAGGTGCAACAAACAGTGGCTTATTGTAGTCCCATGCCCGCACAATGCAT
GTCAGCAGATTGTCACACAATCCACCTGCAATCAATCATGAGATGAGATG
AATCAGATCAGCCGCGGCCGGCGGTGGTAGAACAGCAATCCACGAGTGGC
GTGGCGGAGGGGAGACAACAATCGACGTCGCAGCGTCGGAGTGTGGAAAC
CGACGACTAACGGTCGAAAGCATTGCTATAAATAGTTGAAGAGAAGGACA
CCACATAACAACAATTAGCGAGTGCAACCAACAACAAGTCCATTTACCTG
TCATCAAGCCTTTGACACAACGTTCTATTCGGACAAAACCA
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