CN187880

Overview
NameCN187880
Unique NameCN187880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.324e-51
Identity = 101/161 (62.73%), Postives = 116/161 (72.05%), Query Frame = -1
Query:  144 MSLIPSFFGNRRSSVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEISG 626
            MSLIP+FFG RR++V DPF+LDVWDPF+DFPFP+  SSA   +F  E SA V+ RVDWKETPEAHVFK D+PGL             VLQISG+RN+EKEDKNDTWHRVERSSG F RRFRLPEN K++Q+KASME+G                KAIEISG
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.817e-49
Identity = 100/161 (62.11%), Postives = 115/161 (71.43%), Query Frame = -1
Query:  144 MSLIPSFFGNRRSSVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEISG 626
            MSLIPSFFG RRS+V DPF+LDVWDPF+DFPF +   SALS+ FP E SA V+ RVDWKETPEAHVFK DLPG+             VLQISG+R++EKEDKND WHR+ERSSG F RRFRLPEN KMDQ+KA+ME+G                K I+ISG
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNN---SALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.285e-49
Identity = 101/161 (62.73%), Postives = 112/161 (69.57%), Query Frame = -1
Query:  144 MSLIPSFFGNRRSSVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEISG 626
            MSLIPSFFG RRSSV DPF+LDVWDPF+DFPFPS  S+        E SA V+ RVDWKETPEAHVFK D+PGL             VLQISG+RN+EKEDKNDTWHRVERSSG   RRFRLPEN K+DQ+KASME+G                KAI+ISG
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLSA--------ENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.900e-47
Identity = 98/161 (60.87%), Postives = 112/161 (69.57%), Query Frame = -1
Query:  144 MSLIPSFFGNRRSSVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEISG 626
            MSLIPSFF  RRS+V DPF+LDVWDP +DFPF +   S+ S+ FP E  A V+ RVDWKETPEAHVFK DLPGL             VLQISG+R++EKEDKND WHRVERSSG F RRFRLPEN KMD++KASME+G                K+IEISG
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSN---SSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.788e-47
Identity = 98/161 (60.87%), Postives = 111/161 (68.94%), Query Frame = -1
Query:  144 MSLIPSFFGNRRSSVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEISG 626
            MSLIPS FG RRS+V DPF+LDVWDPF+DF FP+  S+        E SA VN RVDWKETPEAHVF+ D+PGL             VLQISG+RN+EKEDKNDTWHRVERSSG F RRFRLPEN K++Q+KASME+G                KAIEISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSLSA--------ENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.206e-46
Identity = 96/161 (59.63%), Postives = 111/161 (68.94%), Query Frame = -1
Query:  144 MSLIPSFFGNRRSSVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEISG 626
            MSLIP FFG RRS+V DPF+LD+WDPF+DF  P+   SA       E SA V+ RVDWKETPEAHVFK D+PGL             VLQISG+RN+EKEDKNDTWHRVERSSG F+RRFRLPEN K++++KASME+G                KAIEISG
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDFHVPTSSVSA-------ENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.047e-45
Identity = 95/161 (59.01%), Postives = 112/161 (69.57%), Query Frame = -1
Query:  144 MSLIPSFFGNRRSSVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEISG 626
            MS+IPSFFG RRS+V DPF+LDVWDPF+DFP  +  SSA  S+F  ET+A VN  +DWKETP+AHVFK DLPGL             VLQISG+RN EKE+KND WHRVERSSG F RRFRLPEN K+D++KA+M +G                KAI+ISG
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVT--SSA--SEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.347e-44
Identity = 94/162 (58.02%), Postives = 112/162 (69.14%), Query Frame = -1
Query:  144 MSLIPSFFGN-RRSSVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEISG 626
            MS+IPSFF N RRS++ DPF+LDVWDPF++           SS    E SA+VNARVDW+ETPEAHVFK DLPGL             VL+ISG+R++EKEDKNDTWHRVERSSG F+RRFRLPENVKMDQ+KA+ME+G                K+I+ISG
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELT---------SSSLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.298e-44
Identity = 89/140 (63.57%), Postives = 105/140 (75.00%), Query Frame = -1
Query:  213 MSLIPSFFGNRR--SSVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 626
            MSLIPSFFGN R  +S+ DPF+LDVWDPF++  FPS  S         ETSA+ NARVDWKET EAHVFK DLPG+             VL+ISG+R++EKE+K DTWHRVERSSG FSR+F+LPENVKMDQ+KASME+G
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSLSG--------ETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENG 132          
BLAST of CN187880 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.334e-43
Identity = 95/162 (58.64%), Postives = 107/162 (66.05%), Query Frame = -1
Query:  144 MSLIPSFFGNRRS-SVSDPFALDVWDPFRDFPFPSGYSSALSSQFPPETSAVVNARVDWKETPEAHVFKTDLPGLXXXXXXXXXXXXXVLQISGQRNIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIEISG 626
            MSLIP  FG+RRS SV DPF++DV+DPF++  F    S         ETSA  N R+DWKETPEAHVFK DLPGL             VLQISG+RN+EKEDKNDTWHRVERSSG F RRFRLPEN KMDQ+KASME+G                K+IEISG
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPFKELGFTVSNSG--------ETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
The following BLAST results are available for this feature:
BLAST of CN187880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
HSP16_SOYBN4.324e-5162.7318.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA1.817e-4962.1118.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_SOYBN5.285e-4962.7317.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA2.900e-4760.8718.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP13_SOYBN3.788e-4760.8717.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP14_SOYBN3.206e-4659.6317.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_DAUCA6.047e-4559.0117.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS17B_ARATH1.347e-4458.0217.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS178_ARATH2.298e-4463.5717.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP12_SOLPE4.334e-4358.6417.6 kDa class I heat shock protein OS=Solanum per... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187880 ID=CN187880; Name=CN187880; organism=Citrus sinensis; type=EST; length=659bp
TTTTTTTTGCAAAAACAGTCCAGTTTATTGATTACACCCAGAATACCATT
ACACTTACATTCATGCAAGCAAATTACAAAACCAAAACATCACAGCATCC
TTATACAAGTATGCATAAAGACATACAGACAGACACTGGTTTAACCAGAG
ATTTCGATAGCCTTAACATCAGGTTTGGTCACCTCCACTTTCGGAACAGT
AACAGTGAGCACACCACTCTCCATGGAAGCCTTAATCTGATCCATCTTCA
CATTCTCAGGCAACCTGAACCTCCTCGAGAACATGCCACTGCTGCGCTCA
ACGCGATGCCACGTGTCGTTCTTGTCTTCCTTCTCAATATTCCTCTGACC
GCTTATCTGAAGCACCCTGTCGTCTTCGACCTCGACCTTCACTTCCTCTT
TCCTGAGCCCCGGAAGATCGGTCTTGAACACGTGGGCTTCCGGGGTTTCC
TTCCAGTCCACGCGGGCATTAACGACAGCAGAGGTTTCTGGAGGGAACTG
AGAGGACAGCGCAGACGAATAACCGGAAGGGAAAGGGAAGTCCCTGAATG
GATCCCAAACGTCGAGTGCAAATGGATCAGAGACACTGCTGCGTCGGTTT
CCGAAGAAGCTTGGAATCAACGACATCGTTTCTCAATAGAGTGATACGGC
TTTCCTCGA
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