CN187873

Overview
NameCN187873
Unique NameCN187873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187873 vs. ExPASy Swiss-Prot
Match: PFPA_RICCO (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Ricinus communis GN=PFP-ALPHA PE=3 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 4.220e-102
Identity = 182/222 (81.98%), Postives = 194/222 (87.39%), Query Frame = 2
Query:  110 MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 775
            MDSDFGIPRELS LQ+LRSLY+PELPPCLQGTTVRVE GD TT    A  H+ISRSFPHTYGQPLAHFLRATAKV DA II+EHPA+RVG+VFCGRQSPGGHNVVWGL++ALK+HNP ST            AQKTLEVT +ILSTYKNQGGYD+LGRTKDQIRTTEQV+AALT CKNL LDGLVIIGGVTSNTDAA LAETFAEAKCPTKVVGVPVTLNGD
Sbjct:    1 MDSDFGIPRELSDLQKLRSLYKPELPPCLQGTTVRVELGDGTTACSEAGAHTISRSFPHTYGQPLAHFLRATAKVADAHIISEHPAMRVGVVFCGRQSPGGHNVVWGLHNALKIHNPNSTLLGFLGGSEGLFAQKTLEVTDDILSTYKNQGGYDLLGRTKDQIRTTEQVHAALTTCKNLKLDGLVIIGGVTSNTDAAQLAETFAEAKCPTKVVGVPVTLNGD 222          
BLAST of CN187873 vs. ExPASy Swiss-Prot
Match: PFPA_SOLTU (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 1.960e-99
Identity = 175/222 (78.83%), Postives = 192/222 (86.49%), Query Frame = 2
Query:  110 MDSDFGIPRELSGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 775
            MD+D+GIPRELS LQ+LRS Y PELPPCLQGTTVRVE  D+TT ADPA  H+I R FPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVG++FCGRQSPGGHNV+WGL+DALK+HNPK+             AQKTLE+T ++L+TYKNQGGYDMLGRTKDQIRTTEQVNAA+ ACK L LDGLVIIGGVTSNTDAA+LAE FAE KC TKVVGVPVTLNGD
Sbjct:    1 MDADYGIPRELSDLQKLRSHYHPELPPCLQGTTVRVELRDATTAADPAGEHTIKRFFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGVLFCGRQSPGGHNVIWGLHDALKVHNPKNILLGFLGGSEGLFAQKTLEITDDVLATYKNQGGYDMLGRTKDQIRTTEQVNAAMAACKALKLDGLVIIGGVTSNTDAAHLAEKFAETKCLTKVVGVPVTLNGD 222          
BLAST of CN187873 vs. ExPASy Swiss-Prot
Match: PFPB_SOLTU (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.088e-28
Identity = 72/197 (36.55%), Postives = 108/197 (54.82%), Query Frame = 2
Query:  188 PCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPD-AQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 775
            P + G+  +V  G  ++ A   +   I++ FP  YGQP        + VPD +  +  +  +++G+V  G Q+PGGHNV+ G++D L+ H   ST              K + +T E +  Y+NQGG+DM+   +D+I T EQ   A    K L+LDGLV+IGG  SNT+A  LAE F      T+V+G P T++GD
Sbjct:   28 PSVLGSPFKVVDGPPSSAAGHPE--EIAKLFPSLYGQP------HVSLVPDDSGDVAMNQILKIGVVLSGGQAPGGHNVISGIFDYLQTHCKGSTMYGFRGGPAGVMKGKYVVLTPEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETAKKLDLDGLVVIGGDDSNTNACLLAENFRSKNLKTRVIGCPKTIDGD 216          
BLAST of CN187873 vs. ExPASy Swiss-Prot
Match: PFPB_RICCO (Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Ricinus communis GN=PFP-BETA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.120e-25
Identity = 71/212 (33.49%), Postives = 110/212 (51.89%), Query Frame = 2
Query:  143 SGLQQLRSLYQPELPPCLQGTTVRVEFGDSTTTADPADTHSISRSFPHTYGQPLAHFLRATAKVPD-AQIITEHPAIRVGIVFCGRQSPGGHNVVWGLYDALKLHNPKSTXXXXXXXXXXXXAQKTLEVTKEILSTYKNQGGYDMLGRTKDQIRTTEQVNAALTACKNLNLDGLVIIGGVTSNTDAAYLAETFAEAKCPTKVVGVPVTLNGD 775
            S +Q  R  +   LP  L      V+   S+   +P +   I++ FP+ +GQP A        VPD A  +  +  +++G+V  G Q+PGGHNV+ G++D L+     S                 +++T + +  Y+NQGG+DM+   +D+I T EQ   A      L+L+GLV+IGG  SNT+A  LAE F      T+V+G P T++GD
Sbjct:   14 SEVQSSRIEHVLPLPSVLNHPFKIVQGPPSSAAGNPDE---IAKLFPNLFGQPSAML------VPDVADSLDSNQQLKIGLVLSGGQAPGGHNVISGIFDYLQDRAKGSILYGFRGGPAGIMKCNYVQLTADYIHPYRNQGGFDMICSGRDKIETPEQFKQAEETAGKLDLNGLVVIGGDDSNTNACLLAENFRSKNLKTRVIGCPKTIDGD 216          
The following BLAST results are available for this feature:
BLAST of CN187873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PFPA_RICCO4.220e-10281.98Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
PFPA_SOLTU1.960e-9978.83Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
PFPB_SOLTU3.088e-2836.55Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
PFPB_RICCO7.120e-2533.49Pyrophosphate--fructose 6-phosphate 1-phosphotrans... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005C07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187873 ID=CN187873; Name=CN187873; organism=Citrus sinensis; type=EST; length=776bp
GAGGCAAAAACCCCAATCAGTATAGTAGTACTGCATACAACACAGTCAAT
ACCAAATACCAAAAAAAACGCAACAAACAGTAATAACCATCCACTGAAAC
GAAAACACAATGGACTCGGATTTCGGTATTCCGAGAGAACTCTCCGGCCT
TCAACAACTCCGATCTCTTTACCAGCCCGAGCTCCCTCCTTGCCTTCAGG
GAACTACTGTCAGGGTGGAATTTGGTGATTCAACTACAACTGCTGACCCA
GCTGATACCCATTCCATTAGCCGATCCTTTCCTCACACTTACGGTCAGCC
TTTGGCTCACTTTCTTAGAGCAACTGCCAAAGTACCTGATGCTCAAATTA
TAACTGAGCATCCTGCTATTAGGGTGGGAATTGTCTTCTGTGGAAGACAA
TCTCCTGGTGGACACAATGTCGTTTGGGGCCTTTACGATGCGCTCAAGCT
ACACAACCCTAAGAGTACTTTGCTTGGATTTTTGGGTGGTTCTGAAGGTT
TATTTGCACAGAAAACTCTTGAGGTCACAAAAGAAATTCTTTCAACCTAC
AAAAATCAAGGTGGTTATGACATGCTGGGACGCACAAAAGATCAAATCAG
AACAACAGAGCAAGTCAATGCTGCACTAACTGCATGCAAAAATTTGAACT
TGGATGGCCTTGTCATTATTGGAGGGGTCACATCAAACACAGATGCTGCA
TACCTTGCTGAAACATTTGCTGAAGCAAAATGCCCAACAAAGGTGGTTGG
TGTCCCTGTTACTTTGAATGGAGATC
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