CN187871

Overview
NameCN187871
Unique NameCN187871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF3_HEVBR (Profilin-3 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.203e-59
Identity = 108/131 (82.44%), Postives = 117/131 (89.31%), Query Frame = -2 
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQTYVD+HLMCDIDGHHLT+AAI+GHDGSVWAQSS+FPQFKPEE+AAIMKDF+EPGSLAPTGLHLGGTKYMVIQGEPGAVIR             GQALI GIYDEPLTPGQCNMIVERLGDYL++QG+
Sbjct:    1 MSWQTYVDEHLMCDIDGHHLTAAAIIGHDGSVWAQSSSFPQFKPEEVAAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNMIVERLGDYLLEQGM 131
[Close]
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF6_HEVBR (Profilin-6 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.738e-58
Identity = 107/131 (81.68%), Postives = 115/131 (87.79%), Query Frame = -2 
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQTYVDDHLMCDIDGH LT+AAI+GHDGSVWAQSS+FPQFK +E+AA+MKDF+EPGSLAPTGLHLGGTKYMVIQGEPGAVIR             GQALI GIYDEPLTPGQCNMIVERLGDYL+DQGL
Sbjct:    1 MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAVMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNMIVERLGDYLLDQGL 131
[Close]
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF_PYRCO (Profilin OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.269e-58
Identity = 107/131 (81.68%), Postives = 113/131 (86.26%), Query Frame = -2 
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQ YVDDHLMCDIDGHHLT+AAI+GHDGSVWAQSS FP+FKPEEI AIMKDF+EPGSLAPTGLHLGGTKYMVIQGE GAVIR              QAL+FGIY+EPLTPGQCNMIVERLGDYLIDQGL
Sbjct:    1 MSWQAYVDDHLMCDIDGHHLTAAAILGHDGSVWAQSSTFPKFKPEEITAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEGGAVIRGKKGSGGVTVKKTSQALVFGIYEEPLTPGQCNMIVERLGDYLIDQGL 131
[Close]
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF_LITCN (Profilin OS=Litchi chinensis PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.964e-58
Identity = 105/131 (80.15%), Postives = 113/131 (86.26%), Query Frame = -2 
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQTYVDDHLMC+ DG HLT+AAI+GHDGSVWAQS+NFPQFKP EIAAIMKDF+EPGSLAPTGLHLGGTKYMVIQGEPGAVIR              QALI GIYDEP+TPGQCNM+VERLGDYL+DQGL
Sbjct:    1 MSWQTYVDDHLMCETDGQHLTAAAIIGHDGSVWAQSANFPQFKPAEIAAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGPGGITVKKTTQALIIGIYDEPMTPGQCNMVVERLGDYLVDQGL 131
[Close]
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF5_HEVBR (Profilin-5 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.126e-57
Identity = 105/131 (80.15%), Postives = 114/131 (87.02%), Query Frame = -2 
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQTYVDDHLMCDIDGH LT+AAI+GHDGSVWAQSS FPQFK +E+AA+MKDF+EPGSLAPTGLHLGGTKYMVIQGEPGAVIR             GQALI GIYDEPLTPGQCNMIVERLGDYL++QG+
Sbjct:    1 MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSGFPQFKSDEVAAVMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNMIVERLGDYLLEQGM 131
[Close]
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF4_HEVBR (Profilin-4 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.277e-57
Identity = 104/131 (79.39%), Postives = 113/131 (86.26%), Query Frame = -2 
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQTYVDDHLMCDIDGH LT+AAI+GHDGSVWAQSS+FPQFK +E+AAIMKDF+EPGSLAPTGLHLG TKYMVIQGEPGAVIR              QALI GIYDEPLTPGQCNMIVERLGDYL++QG+
Sbjct:    1 MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAIMKDFDEPGSLAPTGLHLGSTKYMVIQGEPGAVIRGKKGSGGITVKKTSQALIIGIYDEPLTPGQCNMIVERLGDYLLEQGM 131
[Close]
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF1_MALDO (Profilin-1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.301e-57
Identity = 106/131 (80.92%), Postives = 112/131 (85.50%), Query Frame = -2 
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQ YVDD LMCDIDGHHLT+AAI+GHDGSVWA SS FP+FKPEEI AIMKDF+EPGSLAPTGLHLGGTKYMVIQGE GAVIR             GQAL+FGIY+EPLTPGQCNMIVERLGDYLIDQGL
Sbjct:    1 MSWQAYVDDRLMCDIDGHHLTAAAILGHDGSVWAHSSTFPKFKPEEITAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEGGAVIRGKKGSGGVTVKKTGQALVFGIYEEPLTPGQCNMIVERLGDYLIDQGL 131
[Close]
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF1_RICCO (Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.072e-56
Identity = 104/131 (79.39%), Postives = 110/131 (83.97%), Query Frame = -2 
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQTYVDDHLMC+I+G+HLTSAAI+G DGSVWAQSS FPQFKPEEI AIM DF EPGSLAPTGL+L GTKYMVIQGEPGAVIR              QALI GIYDEP+TPGQCNMIVERLGDYLIDQGL
Sbjct:    1 MSWQTYVDDHLMCEIEGNHLTSAAIIGQDGSVWAQSSTFPQFKPEEITAIMNDFNEPGSLAPTGLYLSGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131
[Close]
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF1_LILLO (Profilin-1 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.833e-55
Identity = 99/131 (75.57%), Postives = 110/131 (83.97%), Query Frame = -2 
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQTYVDDHLMCD+DG HLT++AIVGHDGS+WAQS+ FPQFKPEEI  IM DF EPGSLAPTGL+L G KYMVIQGEPGAVIR             GQALIFGIY+EP+TPGQCNM+VER+GDYL+DQGL
Sbjct:    1 MSWQTYVDDHLMCDVDGQHLTASAIVGHDGSIWAQSAGFPQFKPEEITGIMNDFAEPGSLAPTGLYLAGMKYMVIQGEPGAVIRGKKGSGGVTIKKTGQALIFGIYEEPMTPGQCNMVVERMGDYLVDQGL 131
[Close]
BLAST of CN187871 vs. ExPASy Swiss-Prot
Match: PROF_CHEAL (Profilin OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.597e-54
Identity = 97/131 (74.05%), Postives = 111/131 (84.73%), Query Frame = -2 
Query:  293 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXGQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 685
            MSWQTYVDDHLMCDI+G+HL+SAAI+GHDG+VWAQS +FPQ KPEE++AIMKDF EPGSLAPTGLHLGGTKYMVIQGEPG VIR              QALI GIY EP+TPGQCNM+VER+GDYL++QG+
Sbjct:    1 MSWQTYVDDHLMCDIEGNHLSSAAILGHDGTVWAQSPSFPQLKPEEVSAIMKDFNEPGSLAPTGLHLGGTKYMVIQGEPGDVIRGKKGPGGVTIKKTNQALIIGIYGEPMTPGQCNMVVERIGDYLVEQGM 131
The following BLAST results are available for this feature:
BLAST of CN187871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PROF3_HEVBR1.203e-5982.44Profilin-3 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF6_HEVBR1.738e-5881.68Profilin-6 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF_PYRCO2.269e-5881.68Profilin OS=Pyrus communis PE=1 SV=1[more]
PROF_LITCN2.964e-5880.15Profilin OS=Litchi chinensis PE=1 SV=1[more]
PROF5_HEVBR1.126e-5780.15Profilin-5 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF4_HEVBR3.277e-5779.39Profilin-4 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF1_MALDO7.301e-5780.92Profilin-1 OS=Malus domestica PE=1 SV=1[more]
PROF1_RICCO8.072e-5679.39Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1[more]
PROF1_LILLO6.833e-5575.57Profilin-1 OS=Lilium longiflorum PE=2 SV=1[more]
PROF_CHEAL2.597e-5474.05Profilin OS=Chenopodium album PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005C06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187871 ID=CN187871; Name=CN187871; organism=Citrus sinensis; type=EST; length=791bp
CCATATCATATTATCAGAGTATCAACAGTATCCAAAGATTCAAATTCTTC
AAAACTGCAATACACATAAATTAAGGAAACATGAAGGAATTGGGGATGAA
AAAAAAAAGATAAAAAAGGAACCCTAAAGAACCAAAAGAGGCGGGAAAAA
AAAATCACTCTTGTCCTCACACAGTTATTTTTGCAGCAAACAAATTTATA
CTGCCAGTTCAAGACCAAATATGGAAGAAGAGGCAAAGCCCGAAAACCAG
AAAGCAATATATCGAAACCATTTGAAGTTGACATGGGATCTACAGGCCCT
GATCAATGAGATAATCCCCCAACCTCTCAACGATCATGTTGCACTGTCCT
GGAGTCAATGGTTCATCGTATATACCAAAAATCAGGGCTTGGCCCGTTTT
CTTGACGGTGACACCACCAGAACCCTTTTTTCCACGAATCACAGCTCCAG
GCTCACCCTGGATTACCATGTACTTGGTGCCTCCAAGGTGCAAACCAGTT
GGGGCAAGAGAACCGGGCTCTTCAAAATCTTTCATGATTGCAGCAATCTC
TTCAGGCTTGAACTGAGGGAAATTGGAGCTCTGGGCCCAAACGCTGCCGT
CGTGACCGACGATCGCAGCTGAGGTGAGATGATGGCCGTCGATATCGCAC
ATCAGATGATCATCAACGTATGTTTGCCACGACATTTTCAACAATCTAAA
TTCTCACGGCAAATTCAATTGTTTGTTTAATTCCTATGTTAATTCCTTCC
CCATACAGACACAGGAAAAAGAATCTCTCTCAGCTTCCTTC
back to top