CK938766

Overview
NameCK938766
Unique NameCK938766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938766_ssr476 microsatellite CK938766_ssr476:476..487. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK938766 vs. ExPASy Swiss-Prot
Match: ARD1A_MOUSE (N-terminal acetyltransferase complex ARD1 subunit homolog A OS=Mus musculus GN=Ard1a PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.831e-33
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 3
Query:  111 IRKATVDDLLAMQACNLFCLPENYQMKYYFYHILSWPQLLYVAEDYNGRIVGYVLAKMEEESNEC-HGHITSLAVLRTHRKLGLATKLMNAAQSAM 395
            IR A  +DL+ MQ CNL CLPENYQMKYYFYH LSWPQL Y+AED NG+IVGYVLAKMEE+ ++  HGHITSLAV R+HR+LGLA KLM+ A  AM
Sbjct:    3 IRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDENGKIVGYVLAKMEEDPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAM 98          
BLAST of CK938766 vs. ExPASy Swiss-Prot
Match: ARD1A_HUMAN (N-terminal acetyltransferase complex ARD1 subunit homolog A OS=Homo sapiens GN=ARD1A PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.831e-33
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 3
Query:  111 IRKATVDDLLAMQACNLFCLPENYQMKYYFYHILSWPQLLYVAEDYNGRIVGYVLAKMEEESNEC-HGHITSLAVLRTHRKLGLATKLMNAAQSAM 395
            IR A  +DL+ MQ CNL CLPENYQMKYYFYH LSWPQL Y+AED NG+IVGYVLAKMEE+ ++  HGHITSLAV R+HR+LGLA KLM+ A  AM
Sbjct:    3 IRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDENGKIVGYVLAKMEEDPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAM 98          
BLAST of CK938766 vs. ExPASy Swiss-Prot
Match: ARD1A_BOVIN (N-terminal acetyltransferase complex ARD1 subunit homolog A OS=Bos taurus GN=ARD1A PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.831e-33
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 3
Query:  111 IRKATVDDLLAMQACNLFCLPENYQMKYYFYHILSWPQLLYVAEDYNGRIVGYVLAKMEEESNEC-HGHITSLAVLRTHRKLGLATKLMNAAQSAM 395
            IR A  +DL+ MQ CNL CLPENYQMKYYFYH LSWPQL Y+AED NG+IVGYVLAKMEE+ ++  HGHITSLAV R+HR+LGLA KLM+ A  AM
Sbjct:    3 IRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDENGKIVGYVLAKMEEDPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAM 98          
BLAST of CK938766 vs. ExPASy Swiss-Prot
Match: ARD1B_MOUSE (N-terminal acetyltransferase complex ARD1 subunit homolog B OS=Mus musculus GN=Ard1b PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.697e-33
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 3
Query:  111 IRKATVDDLLAMQACNLFCLPENYQMKYYFYHILSWPQLLYVAEDYNGRIVGYVLAKMEEESNEC-HGHITSLAVLRTHRKLGLATKLMNAAQSAM 395
            IR A  DDL+ MQ CNL CLPENYQMKYYFYH LSWPQL Y+AED +G+IVGYVLAKMEE+ ++  HGHITSLAV R+HR+LGLA KLM+ A  AM
Sbjct:    3 IRNARPDDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDEDGKIVGYVLAKMEEDPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAM 98          
BLAST of CK938766 vs. ExPASy Swiss-Prot
Match: ARD1B_HUMAN (N-terminal acetyltransferase complex ARD1 subunit homolog B OS=Homo sapiens GN=ARD1B PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 8.237e-33
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  111 IRKATVDDLLAMQACNLFCLPENYQMKYYFYHILSWPQLLYVAEDYNGRIVGYVLAKMEEESNEC-HGHITSLAVLRTHRKLGLATKLMNAAQSAM 395
            IR A  DDL+ MQ CNL CLPENYQMKYY YH LSWPQL Y+AED +G+IVGYVLAKMEEE ++  HGHITSLAV R+HR+LGLA KLM+ A  AM
Sbjct:    3 IRNAQPDDLMNMQHCNLLCLPENYQMKYYLYHGLSWPQLSYIAEDEDGKIVGYVLAKMEEEPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAM 98          
BLAST of CK938766 vs. ExPASy Swiss-Prot
Match: ARD1B_RAT (N-terminal acetyltransferase complex ARD1 subunit homolog B OS=Rattus norvegicus GN=Ard1b PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.076e-32
Identity = 68/96 (70.83%), Postives = 79/96 (82.29%), Query Frame = 3
Query:  111 IRKATVDDLLAMQACNLFCLPENYQMKYYFYHILSWPQLLYVAEDYNGRIVGYVLAKMEEESNEC-HGHITSLAVLRTHRKLGLATKLMNAAQSAM 395
            IR A  +DL+ MQ CNL CLPENYQMKYYFYH LSWPQL Y+AED +G+IVGYVLAKMEE+ ++  HGHITSLAV R+HR+LGLA KLM+ A  AM
Sbjct:    3 IRNARPEDLMNMQHCNLLCLPENYQMKYYFYHGLSWPQLSYIAEDEDGKIVGYVLAKMEEDPDDVPHGHITSLAVKRSHRRLGLAQKLMDQASRAM 98          
BLAST of CK938766 vs. ExPASy Swiss-Prot
Match: ARD1_DICDI (N-terminal acetyltransferase complex ARD1 subunit homolog OS=Dictyostelium discoideum GN=natA PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.231e-28
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 3
Query:  102 MVCIRKATVDDLLAMQACNLFCLPENYQMKYYFYHILSWPQLLYVAEDYNGRIVGYVLAKMEEESNECHGHITSLAVLRTHRKLGLATKLMNAAQSAMEQV 404
            MV IR   + DL++MQ  NL CLPENYQMKYY YH L+WPQ  +VAED  G +VGYVLAK++E   +  GHITSLAVLR+ RKLG+ATKLM  A+ A+ +V
Sbjct:    1 MVSIRPCQIGDLMSMQNANLTCLPENYQMKYYLYHFLTWPQTSFVAEDDKGNVVGYVLAKIDENEPK-RGHITSLAVLRSQRKLGIATKLMKQAEVALLEV 100          
BLAST of CK938766 vs. ExPASy Swiss-Prot
Match: ARD1_SCHPO (N-terminal acetyltransferase A complex catalytic subunit ard1 OS=Schizosaccharomyces pombe GN=ard1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.042e-27
Identity = 61/100 (61.00%), Postives = 74/100 (74.00%), Query Frame = 3
Query:  111 IRKATVDDLLAMQACNLFCLPENYQMKYYFYHILSWPQLLYVAEDYNGRIVGYVLAKMEEESNE--CHGHITSLAVLRTHRKLGLATKLMNAAQSAMEQV 404
            IR A + DL  MQ CNL  LPENYQ+KYY YH +SWP L YVA D  GR+VGYVLAKMEEE  +   HGHITS++V+R++R LGLA +LM  +Q AM +V
Sbjct:    3 IRPARISDLTGMQNCNLHNLPENYQLKYYLYHAISWPMLSYVATDPKGRVVGYVLAKMEEEPKDGIPHGHITSVSVMRSYRHLGLAKRLMVQSQRAMVEV 102          
BLAST of CK938766 vs. ExPASy Swiss-Prot
Match: NAT5_DICDI (N-acetyltransferase 5 homolog OS=Dictyostelium discoideum GN=nat5 PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.561e-15
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 3
Query:  102 MVCIRKATVDDLLAMQACNLFCLPENYQMKYYFYHILSWPQLLYVAEDYNGRIVGYVLAKMEEESNECHGHITSLAVLRTHRKLGLATKLMNAAQSAMEQV 404
            M  IR+   DDL      NL  L E Y + +Y  ++  WP LL +AED NG+ +GY++ K E E    HGH+T+++V    R++GLA +LM+  +   E++
Sbjct:    1 MTTIRRFVCDDLFKFNNINLDYLTETYYLPFYLQYLSKWPSLLSMAEDVNGKPMGYMIGKAEGEGINWHGHVTAVSVAPEFRRIGLADRLMHILEEGSEKI 101          
BLAST of CK938766 vs. ExPASy Swiss-Prot
Match: NAT5_XENTR (N-terminal acetyltransferase B complex catalytic subunit NAT5 OS=Xenopus tropicalis GN=nat5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.468e-13
Identity = 38/102 (37.25%), Postives = 54/102 (52.94%), Query Frame = 3
Query:  102 MVCIRKATVDDLLAMQACNLFCLPENYQMKYYFYHILSWPQLLYVAEDYNGRIVGYVLAKMEEE--SNECHGHITSLAVLRTHRKLGLATKLMNAAQSAMEQ 401
            M  +R  T DDL      NL  L E Y + +Y  ++  WP+   VAE   G ++GY++ K E      E HGH+T+L+V    R+LGLA KLM   +   E+
Sbjct:    1 MTSLRPFTCDDLFRFNNINLDPLTETYGIPFYLQYLAHWPEYFIVAEAPGGELMGYIMGKAEGSVAREEWHGHVTALSVAPEFRRLGLAAKLMELLEEISER 102          
The following BLAST results are available for this feature:
BLAST of CK938766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ARD1A_MOUSE2.831e-3371.88N-terminal acetyltransferase complex ARD1 subunit ... [more]
ARD1A_HUMAN2.831e-3371.88N-terminal acetyltransferase complex ARD1 subunit ... [more]
ARD1A_BOVIN2.831e-3371.88N-terminal acetyltransferase complex ARD1 subunit ... [more]
ARD1B_MOUSE3.697e-3371.88N-terminal acetyltransferase complex ARD1 subunit ... [more]
ARD1B_HUMAN8.237e-3371.88N-terminal acetyltransferase complex ARD1 subunit ... [more]
ARD1B_RAT1.076e-3270.83N-terminal acetyltransferase complex ARD1 subunit ... [more]
ARD1_DICDI1.231e-2861.39N-terminal acetyltransferase complex ARD1 subunit ... [more]
ARD1_SCHPO1.042e-2761.00N-terminal acetyltransferase A complex catalytic s... [more]
NAT5_DICDI1.561e-1537.62N-acetyltransferase 5 homolog OS=Dictyostelium dis... [more]
NAT5_XENTR9.468e-1337.25N-terminal acetyltransferase B complex catalytic s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004438_E05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650002_IIIF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938766 ID=CK938766; Name=CK938766; organism=Citrus sinensis; type=EST; length=627bp
GGGGACCACGGAAACCAAATCGACGAAACTCTAACCCTAAACCCCTAAAC
CAAAAAAAAAGAAAAAAAAGGAAAAAGAGTCTATCAAAATCAACAGAAGC
CATGGTGTGCATACGCAAGGCGACAGTAGACGATTTGCTTGCGATGCAAG
CCTGCAATTTGTTCTGTCTTCCGGAAAATTACCAGATGAAGTATTATTTT
TACCATATTTTATCGTGGCCGCAGCTGCTCTACGTGGCCGAAGATTACAA
CGGCCGTATTGTCGGCTACGTATTGGCTAAGATGGAAGAAGAAAGCAACG
AGTGTCACGGCCACATCACCTCTCTCGCCGTACTTCGCACGCATCGCAAG
TTAGGATTGGCCACTAAGCTTATGAATGCTGCGCAGTCAGCTATGGAACA
GGTCAACGTTTAATAGATGTAGTACCTTTTGTTATTTTTGTTGTTGTTTG
TATGTAATTGAACTGGAAAGTTTAGATTATTATTATTATGTTTATTTGTC
CTTACTGTAGGACGTAGTTAGAGCTTTATCATCGTATGGGTATTGTAGTT
TTATGTTTATAGTTTTGAAAATATATGAACGATTTGTTTTGGGGTGGTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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