CN187862

Overview
NameCN187862
Unique NameCN187862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187862 vs. ExPASy Swiss-Prot
Match: PDIA6_PONAB (Protein disulfide-isomerase A6 OS=Pongo abelii GN=PDIA6 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.990e-16
Identity = 44/136 (32.35%), Postives = 71/136 (52.21%), Query Frame = -1
Query:  108 LDSKAEGRNKSLEMLFSVAEKFKRGHYSFFWAAGGKHPDFENRVGVGGYGYPALVPLNVKKGVFPPLKSAFELGHIXXXXXXXXXXXXGNLPLEGP--PFFVKTEPWDGKDGQIIEGEEFSFDELMAE*AAGKDDL 509
            LD+ A GRN  LE+L  +A+K+K+  + + W   G   + E  +G+GG+GYPA+  +N +K  F  LK +F    I               P+ G   P  V+ EPWDG+DG++   ++    ++  +   GKD+L
Sbjct:  306 LDTGAAGRNSYLEVLLKLADKYKKKMWGWLWTEAGAQSELETALGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGELPVEDDIDLSDVELD-DLGKDEL 440          
BLAST of CN187862 vs. ExPASy Swiss-Prot
Match: PDIA6_HUMAN (Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.990e-16
Identity = 44/136 (32.35%), Postives = 71/136 (52.21%), Query Frame = -1
Query:  108 LDSKAEGRNKSLEMLFSVAEKFKRGHYSFFWAAGGKHPDFENRVGVGGYGYPALVPLNVKKGVFPPLKSAFELGHIXXXXXXXXXXXXGNLPLEGP--PFFVKTEPWDGKDGQIIEGEEFSFDELMAE*AAGKDDL 509
            LD+ A GRN  LE+L  +A+K+K+  + + W   G   + E  +G+GG+GYPA+  +N +K  F  LK +F    I               P+ G   P  V+ EPWDG+DG++   ++    ++  +   GKD+L
Sbjct:  306 LDTGAAGRNSYLEVLLKLADKYKKKMWGWLWTEAGAQSELETALGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGAFPTIVEREPWDGRDGELPVEDDIDLSDVELD-DLGKDEL 440          
BLAST of CN187862 vs. ExPASy Swiss-Prot
Match: PDIA6_RAT (Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 9.876e-16
Identity = 41/114 (35.96%), Postives = 60/114 (52.63%), Query Frame = -1
Query:  174 LDSKAEGRNKSLEMLFSVAEKFKRGHYSFFWAAGGKHPDFENRVGVGGYGYPALVPLNVKKGVFPPLKSAFELGHIXXXXXXXXXXXXGNLPLEGPPF--FVKTEPWDGKDGQI 509
            LD+ A GRN  LE+L  +A+K+K+  + + W   G   + EN +G+GG+GYPA+  +N +K  F  LK +F    I               P+ G  F      EPWDGKDG++
Sbjct:  306 LDTGATGRNSYLEVLLKLADKYKKKMWGWLWTEAGAQYELENALGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPNITPREPWDGKDGEL 419          
BLAST of CN187862 vs. ExPASy Swiss-Prot
Match: PDIA6_MOUSE (Protein disulfide-isomerase A6 OS=Mus musculus GN=Pdia6 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 9.876e-16
Identity = 41/114 (35.96%), Postives = 60/114 (52.63%), Query Frame = -1
Query:  174 LDSKAEGRNKSLEMLFSVAEKFKRGHYSFFWAAGGKHPDFENRVGVGGYGYPALVPLNVKKGVFPPLKSAFELGHIXXXXXXXXXXXXGNLPLEGP--PFFVKTEPWDGKDGQI 509
            LD+ A GRN  LE+L  +A+K+K+  + + W   G   + EN +G+GG+GYPA+  +N +K  F  LK +F    I               P+ G   P     EPWDGKDG++
Sbjct:  306 LDTGAAGRNSYLEVLLKLADKYKKKMWGWLWTEAGAQYELENALGIGGFGYPAMAAINARKMKFALLKGSFSEQGINEFLRELSFGRGSTAPVGGGSFPTITPREPWDGKDGEL 419          
BLAST of CN187862 vs. ExPASy Swiss-Prot
Match: PDIA6_MESAU (Protein disulfide-isomerase A6 OS=Mesocricetus auratus GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.577e-13
Identity = 39/114 (34.21%), Postives = 59/114 (51.75%), Query Frame = -1
Query:  174 LDSKAEGRNKSLEMLFSVAEKFKRGHYSFFWAAGGKHPDFENRVGVGGYGYPALVPLNVKKGVFPPLKSAFELGHIXXXXXXXXXXXXGNLPLEGP--PFFVKTEPWDGKDGQI 509
            LD+ A  RN  LE+L  +A+K+K+  + + W   G   + EN +G+GG+GYPA+  +N +K  F  LK +F    I               P+ G   P     EPWDG+DG++
Sbjct:  306 LDTGA-ARNSYLEILLKLADKYKKKMWGWLWTEAGAQSELENALGIGGFGYPAMARINARKMKFALLKGSFSEQGINEFLRELSFGRASTAPVGGGSFPAITAREPWDGRDGEL 418          
BLAST of CN187862 vs. ExPASy Swiss-Prot
Match: PDIA6_CAEEL (Probable protein disulfide-isomerase A6 OS=Caenorhabditis elegans GN=tag-320 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.577e-13
Identity = 42/125 (33.60%), Postives = 60/125 (48.00%), Query Frame = -1
Query:  141 LDSKAEGRNKSLEMLFSVAEKFKRGHYSFFWAAGGKHPDFENRVGVGGYGYPALVPLNVKKGVFPPLKSAFELG--HIXXXXXXXXXXXXGNLPLEGPPFFVKTEPWDGKDGQIIEGEEFSFDEL 509
            LD ++E RN  L ML   +EKFK+  + + W  G   P  E    VGG+GYPA+  LN +K  +  LK +F     H              +L  +G P   KTE WDGKDG +   ++    ++
Sbjct:  309 LDCQSECRNNYLAMLKEQSEKFKKNLWGWIWVEGAAQPALEESFEVGGFGYPAMTALNFRKNKYAVLKGSFGKDGIHEFLRDLSYGKGRTSSLRGDGFPKIQKTEKWDGKDGALPAEDDIDLSDI 433          
The following BLAST results are available for this feature:
BLAST of CN187862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PDIA6_PONAB1.990e-1632.35Protein disulfide-isomerase A6 OS=Pongo abelii GN=... [more]
PDIA6_HUMAN1.990e-1632.35Protein disulfide-isomerase A6 OS=Homo sapiens GN=... [more]
PDIA6_RAT9.876e-1635.96Protein disulfide-isomerase A6 OS=Rattus norvegicu... [more]
PDIA6_MOUSE9.876e-1635.96Protein disulfide-isomerase A6 OS=Mus musculus GN=... [more]
PDIA6_MESAU1.577e-1334.21Protein disulfide-isomerase A6 OS=Mesocricetus aur... [more]
PDIA6_CAEEL1.577e-1333.60Probable protein disulfide-isomerase A6 OS=Caenorh... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187862 ID=CN187862; Name=CN187862; organism=Citrus sinensis; type=EST; length=509bp
AATACAATAACATTAGTAAGACACAATGGCGTTGATTAATATCAAAATTG
TTCTTAAACCAACTTCTCAACCAGTCTCAATCTTTCTTTTACTGTTCAAA
GGGATTGCAAATCATCCTTGCCTGCTGCCTATTCTGCCATGAGTTCATCA
AAAGAAAATTCCTCCCCTTCAATGATTTGTCCATCTTTTCCGTCCCATGG
TTCAGTTTTCACGAAAAAAGGAGGGCCCTCTAAAGGCAAATTGCCCTTTC
CCCCCCCCCCAAATTCCTTGACAAATTCTACAATATGCCCGAGCTCAAAT
GCACTTTTTAGGGGGGGAAAAACTCCTTTCTTCACATTCAAGGGTACCAA
AGCTGGATACCCATAGCCCCCAACTCCAACGCGATTCTCAAAATCTGGGT
GCTTACCCCCAGCTGCCCAAAAAAAGCTGTAATGACCCCTCTTGAACTTT
TCTGCAACTGAAAACAACATCTCAAGGGACTTGTTCCTTCCTTCCGCCTT
GGAATCCAA
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