CN187842

Overview
NameCN187842
Unique NameCN187842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187842 vs. ExPASy Swiss-Prot
Match: PGDH_MOUSE (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mus musculus GN=Hpgd PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.836e-17
Identity = 59/180 (32.78%), Postives = 91/180 (50.56%), Query Frame = -2
Query:  364 LDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 846
            LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + G+IINM S AGL P    P+Y ASK G++ FTRS          G+R+NV+CP FV+T +             ++   Q+  +M   G +   T+  G   LI D++  G+ + IT  +G+ +
Sbjct:   85 LDILVNNAGVNNE-----------KNWEQTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVDTPILESIEKEENMGQYIEYKDQIKAMMKFYGVLHPSTIANGLINLIEDDALNGAIMKITASKGIHF 253          
BLAST of CN187842 vs. ExPASy Swiss-Prot
Match: PGDH_CAVPO (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Cavia porcellus GN=HPGD PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.077e-16
Identity = 58/180 (32.22%), Postives = 89/180 (49.44%), Query Frame = -2
Query:  364 LDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSLTPYK---SKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 846
            LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + GVIINM S AGL P    P+Y ASK G++ FTRS    +   + G+R+N +CP FV T +             ++    + D+M   G +  + +  G   LI D+   G+ + IT   G+ +
Sbjct:   85 LDILVNNAGVNNE-----------KNWEKTLQINLVSVISGTYLGLDYMSKQHGGEGGVIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMARKLMNSGVRMNAICPGFVNTSILQSIEKEENMGPYIEYTGHIKDMMKCYGILDPEMIANGLITLIEDDDLNGAIMKITTSNGIHF 253          
BLAST of CN187842 vs. ExPASy Swiss-Prot
Match: PGDH_BOVIN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bos taurus GN=HPGD PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.400e-16
Identity = 58/180 (32.22%), Postives = 88/180 (48.89%), Query Frame = -2
Query:  364 LDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELALKAGSQ-----LIDLMG---------GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 846
            LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + G+ INM S AGL P    P+Y ASK G+V FTRS        + G+R+N +CP FV+T +      +      I+ MG         G +    +  G   LI D++  G+ + IT  +G+ +
Sbjct:   85 LDILVNNAGVNNE-----------KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGININMSSLAGLMPVAQQPVYCASKHGIVGFTRSAAMAANLMNSGVRLNAICPGFVDTPILKSIEKEENMGKYIEYMGPIKDMMKYYGILDPSMIANGLITLIEDDALNGAIMKITTSKGIHF 253          
BLAST of CN187842 vs. ExPASy Swiss-Prot
Match: PGDH_RAT (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Rattus norvegicus GN=Hpgd PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.094e-16
Identity = 57/180 (31.67%), Postives = 90/180 (50.00%), Query Frame = -2
Query:  364 LDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 846
            LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + G+IIN+ S AGL P    P+Y ASK G++ FTRS          G+R+NV+CP FV+T +             ++   Q+  +M   G +    +  G   LI D++  G+ + IT  +G+ +
Sbjct:   85 LDILVNNAGVNNE-----------KNWEQTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINISSIAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVKTPILESIEKEENMGQYIEYTDQIKAMMKFYGILDPSAIANGLINLIEDDALNGAIMKITASKGIHF 253          
BLAST of CN187842 vs. ExPASy Swiss-Prot
Match: PGDH_HUMAN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Homo sapiens GN=HPGD PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.094e-16
Identity = 60/191 (31.41%), Postives = 95/191 (49.74%), Query Frame = -2
Query:  337 LDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY--WPTSEEEAK 846
            LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + G+IINM S AGL P    P+Y ASK G+V FTRS        + G+R+N +CP FV T +             ++    + D++   G +    +  G   LI D++  G+ + IT  +G+ +  + T+  +AK
Sbjct:   85 LDILVNNAGVNNE-----------KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQDYDTTPFQAK 264          
BLAST of CN187842 vs. ExPASy Swiss-Prot
Match: PGDH_MACFA (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Macaca fascicularis GN=HPGD PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.347e-16
Identity = 57/180 (31.67%), Postives = 89/180 (49.44%), Query Frame = -2
Query:  364 LDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 846
            LDI +N+AG++N            ++W  TL +NLV+VI  T   +  M  Q   + G+IINM S AGL P    P+Y ASK G+V FTRS        + G+R+N +CP FV T +             ++    + D++   G +    +  G   LI D++  G+ + IT  +G+ +
Sbjct:   85 LDILVNNAGVNNE-----------KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHF 253          
BLAST of CN187842 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 46/117 (39.32%), Postives = 63/117 (53.85%), Query Frame = -2
Query:  499 LDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL-TPYKSKGIRINVLCPEFVETELALKA 846
            LD+ IN+AGI    P HE +      W   L VNL  +   ++ A+  M AA K G IIN  S  GL  +   P Y+ASKGGV+  T+S+   Y    IR+N +CP  ++T L  K+
Sbjct:   81 LDVLINNAGIEIVAPIHEMELS---DWNKVLQVNLTGMFLMSKHALKHMLAAGK-GNIINTCSVGGLVAWPDIPAYNASKGGVLQLTKSMAVDYAKHQIRVNCVCPGIIDTPLNEKS 193          
BLAST of CN187842 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = -2
Query:  499 LDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSL-TPYKSKGIRINVLCPEFVETELALKA 846
            LD+ IN+AGI    P HE +     +W   L+VNL  +   ++ A+  M  + K G IIN  S  G+  +   P Y+ASKGGV+  TRS+   Y    IR+N +CP  ++T L  K+
Sbjct:   81 LDVLINNAGIEIVAPIHEMELS---NWNKVLNVNLTGMFLMSKHALKYMLKSGK-GNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPLNEKS 193          
BLAST of CN187842 vs. ExPASy Swiss-Prot
Match: FABG_ARATH (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g24360 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.834e-11
Identity = 43/134 (32.09%), Postives = 71/134 (52.99%), Query Frame = -2
Query:  457 LDICINSAGISNP---IPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSLT-PYKSKGIRINVLCPEFVETELALKAGSQLIDLMGGFVPM 846
            +D+ +N+AGI+     I   + Q      W   + +NL  V  CTQ A+ IM   KK G IIN+ S  GL        Y+A+KGGV+ F+++      S+ I +NV+CP F+ +++  + G  +   + G +P+
Sbjct:  155 IDVVVNNAGITRDTLLIRMKQSQ------WDEVIALNLTGVFLCTQAAVKIMMK-KKRGRIINISSVVGLIGNIGQANYAAAKGGVISFSKTAAREGASRNINVNVVCPGFIASDMTAELGEDMEKKILGTIPL 281          
BLAST of CN187842 vs. ExPASy Swiss-Prot
Match: DHGA_BACME (Glucose 1-dehydrogenase A OS=Bacillus megaterium GN=gdhA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.834e-11
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = -2
Query:  511 LDICINSAGISNPIPFHEDQTDGTRSWRFTLDVNLVAVIDCTQKAIGIMQAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSLT-PYKSKGIRINVLCPEFVETEL 846
            LD+ IN+AG+ NP+P HE   D   +W   +D NL      +++AI         G +INM S   + P+     Y+ASKGG+ L T +L   Y  KGIR+N + P  + T +
Sbjct:   86 LDVMINNAGVENPVPSHELSLD---NWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPI 195          
The following BLAST results are available for this feature:
BLAST of CN187842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PGDH_MOUSE4.836e-1732.7815-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mu... [more]
PGDH_CAVPO1.077e-1632.2215-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ca... [more]
PGDH_BOVIN2.400e-1632.2215-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bo... [more]
PGDH_RAT4.094e-1631.6715-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ra... [more]
PGDH_HUMAN4.094e-1631.4115-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ho... [more]
PGDH_MACFA5.347e-1631.6715-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ma... [more]
BACC_BACSU2.325e-1139.32Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
BACC2_BACSU3.965e-1137.61Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
FABG_ARATH8.834e-1132.093-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
DHGA_BACME8.834e-1136.28Glucose 1-dehydrogenase A OS=Bacillus megaterium G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187842 ID=CN187842; Name=CN187842; organism=Citrus sinensis; type=EST; length=847bp
TTTTTTTGATGAGAACAAGCTCCATATTCAATCATGTCTCGATAAGGTAA
CAAGACAAAAACTCGCATGATACTTGCATAAATTAAAAAAAAAAAAAACA
CACTCTTCGCATATTAAATTGAGATCTTAGGTTATTGGTATGCCAGCTTC
AGCTCCGCTTTCACATTGCCAGACCAAATGAAAAACTAAATATTGCCTGA
AATTATAGTCACCGAAAGAGTACAGAAGTTTTGACGTAGTTCACAGTTTC
TCAAAACTTTCAGGAACTCGGACACTCAGATTCGAAGGAACCTGAGATGA
GAATCTTTTCATGGAACCTGAAGAGCTCACCGAGTATTTTGCTTCTTCTT
CAGAGGTGGGCCAATACTCCATGCCTCTCCGATTTGTAATCCATAAGCAT
GATCCAGCTTTACTCTCGTCAGTAATAAGCTCAAAAGCACCTTTCACTAC
CGTATCCATAGGTACAAAGCCCCCCATCAGATCAATTAATTGGGAGCCCG
CCTTTAAGGCCAACTCAGTTTCAACAAACTCAGGGCAAAGCACGTTGATG
CGAATTCCCTTGCTTTTGTAGGGAGTAAGTGATCTAGTAAATAAAACAAC
ACCACCTTTGGAAGCAGAGTAGATTGGATCTGTGTAAAATGGATAAAGTC
CTGCAGAAGATCCCATATTTATAATCACTCCAGGCTTTTTTGCAGCTTGC
ATAATTCCAATCGCTTTCTGAGTGCAATCAATAACTGCAACCAAGTTCAC
ATCAAGAGTGAATCTCCATGAACGTGTGCCATCAGTTTGATCCTCGTGGA
ATGGAATGGGATTACTTATGCCAGCACTGTTGATACATATATCCAAT
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