CN187836

Overview
NameCN187836
Unique NameCN187836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: SMBP2_HUMAN (DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.934e-26
Identity = 70/152 (46.05%), Postives = 93/152 (61.18%), Query Frame = -3
Query:  347 LDLAGTGSFY----------NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERL-DELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 769
            +D AG G F           N GE  +V  H+ +L+ AGV    IAV SPY  QV LLR+ L    PE   +E+ ++D FQGRE +AVI+S VRSN  G VGFL + RR+NVA+TRA +HVAV+CDS T+ ++ FL  L+ +    G V+ A
Sbjct:  491 VDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHRHPE---LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 639          
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: SMBP2_MESAU (DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.145e-25
Identity = 66/142 (46.48%), Postives = 93/142 (65.49%), Query Frame = -3
Query:  347 LDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERL-DELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 769
            LD   + S  N GE  +V  H+ +L+ AGV    IAV +PY  QV LLR+ L ++ PE   +E+ ++D FQGRE +AVI++ VRSN  G VGFL + RR+NVA+TRA +HVAV+CDS T+ ++ FL  L+ +    G V+ A
Sbjct:  500 LDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAPYNLQVDLLRQSLSNKHPE---LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVDYFTEHGEVRTA 638          
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: SMBP2_RAT (DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.495e-25
Identity = 63/132 (47.73%), Postives = 89/132 (67.42%), Query Frame = -3
Query:  347 NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERL-DELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 739
            N GE  +V  H+ +L+ AGV    IAV +PY  QV LLR+ L ++ PE   +E+ ++D FQGRE +AVI++ VRSN  G VGFL + RR+NVA+TRA +HVAV+CDS T+ ++ FL  L+ +    G V+ A
Sbjct:  510 NPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNKHPE---LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTA 638          
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: SMBP2_MOUSE (DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.550e-25
Identity = 62/132 (46.97%), Postives = 89/132 (67.42%), Query Frame = -3
Query:  347 NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERL-DELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHA 739
            N GE  +V  H+ +L+ AGV    IAV +PY  QV LLR+ L ++ PE   +E+ ++D FQGRE +AV+++ VRSN  G VGFL + RR+NVA+TRA +HVAV+CDS T+ ++ FL  L+ +    G V+ A
Sbjct:  510 NPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDLLRQSLSNKHPE---LEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTVNNHAFLETLVDYFTEHGEVRTA 638          
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: HCS1_SCHPO (DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces pombe GN=hcs1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.470e-20
Identity = 52/109 (47.71%), Postives = 75/109 (68.81%), Query Frame = -3
Query:  413 NEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERLDELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI 739
            N  EA+IV +H+  L+ AG+    IAV +PY AQV L+R+ L E  +   VE+ ++D  QGRE +A+I S+VRSN +  VGFL + RR+NVAITR  +H+ V+ DS+T+
Sbjct:  525 NHWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVALIRQLLKE--KGIEVEMGSVDKVQGREKEAIIFSLVRSNDVREVGFLAEKRRLNVAITRPKRHLCVIGDSNTV 631          
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: HCS1_YEAST (DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces cerevisiae GN=HCS1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.657e-19
Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = -3
Query:  395 GSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERLDELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTI--CHNTFL 751
            GS YNEGE  IV  H+ +L    V  ++I V SPY AQV  L++ + +  +   +E++T+D FQGRE D +I+S+VRSN    VGFL + RR+NVA+TR  + + VV +   +  C N +L
Sbjct:  541 GSKYNEGEIAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGREKDVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGNIEVLQRCGNKYL 661          
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: RENT1_NEUCR (Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa GN=2E4.130 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.329e-15
Identity = 53/145 (36.55%), Postives = 77/145 (53.10%), Query Frame = -3
Query:  371 SLGCEEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERLDEL-----PEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 790
            +LG EE +  +GT S+ N  EA  V   V     AGV P+ I V +PY  Q   +   +             VEVA++D+FQGRE D +++S VRSN    +GFL D RR+NVA+TRA   + ++ +   +C +     LL H +
Sbjct:  736 NLGNEE-ISASGT-SYLNRTEAANVEKIVTRFFKAGVKPADIGVITPYEGQRSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAKYGLVIIGNPKVLCKHELWHHLLVHFK 878          
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: RENT1_CAEEL (Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans GN=smg-2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.960e-15
Identity = 54/142 (38.03%), Postives = 77/142 (54.23%), Query Frame = -3
Query:  371 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPYVAQVQLLRERL-------DELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 775
            E L  +GT SF N  EA  V   V  LI AGV P  I V + Y  Q   +   +        +L E   VE+A++D+FQGRE D +I++ VRSN +  +GFL D RR+NVAITRA   + +V ++  +  +     L+ H +
Sbjct:  729 EELSASGT-SFLNRTEAANVEKLVSKLIKAGVQPHQIGVITSYEGQRSFIVNYMHTQGTLNSKLYE--NVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVLARHDLWHELINHYK 867          
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: RENT1_ARATH (Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.454e-14
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = -3
Query:  371 EEHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY----------VAQVQLLRERLDELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIR 778
            +E +  +GT S+ N  EA  V   V + + +GV PS I V +PY          +A+   LR++L +      +EVA++DSFQGRE D +I+S VRSN    +GFL D RR+NVA+TRA   + ++ +   +        LL H +
Sbjct:  774 QEEISASGT-SYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAYIVNYMARNGSLRQQLYK-----EIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYK 913          
BLAST of CN187836 vs. ExPASy Swiss-Prot
Match: NAM7_YEAST (ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae GN=NAM7 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.511e-14
Identity = 54/144 (37.50%), Postives = 75/144 (52.08%), Query Frame = -3
Query:  362 EHLDLAGTGSFYNEGEAEIVVHHVFSLICAGVSPSAIAVQSPY------VAQVQLLRERLDELPEAAGVEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRMNVAITRACKHVAVVCDSSTICHNTFLARLLRHIRYFG 775
            E +   GT SF N  EA      +  L   GV P  I V +PY      + Q   +   LD+      VEVA++D+FQGRE D +I+S VR+N   A+GFL D RR+NV +TRA   + ++ +  ++  NT    LL H R  G
Sbjct:  691 EEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDK-DLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG 832          
The following BLAST results are available for this feature:
BLAST of CN187836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
SMBP2_HUMAN3.934e-2646.05DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGH... [more]
SMBP2_MESAU1.145e-2546.48DNA-binding protein SMUBP-2 OS=Mesocricetus auratu... [more]
SMBP2_RAT1.495e-2547.73DNA-binding protein SMUBP-2 OS=Rattus norvegicus G... [more]
SMBP2_MOUSE2.550e-2546.97DNA-binding protein SMUBP-2 OS=Mus musculus GN=Igh... [more]
HCS1_SCHPO2.470e-2047.71DNA polymerase alpha-associated DNA helicase A OS=... [more]
HCS1_YEAST4.657e-1942.98DNA polymerase alpha-associated DNA helicase A OS=... [more]
RENT1_NEUCR5.329e-1536.55Regulator of nonsense transcripts 1 homolog OS=Neu... [more]
RENT1_CAEEL6.960e-1538.03Regulator of nonsense transcripts 1 OS=Caenorhabdi... [more]
RENT1_ARATH3.454e-1436.30Regulator of nonsense transcripts 1 homolog OS=Ara... [more]
NAM7_YEAST4.511e-1437.50ATP-dependent helicase NAM7 OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187836 ID=CN187836; Name=CN187836; organism=Citrus sinensis; type=EST; length=795bp
TTTTTATAAATTGCAACAATTTTTTTTCTTTTTCATTTGTATCGTATCAC
CCTTAGAACGTATAATCTGTGTAGTTTATATACAAATCCATATTCGACGG
TCAATGCATTTACGAACGACTTTTTTCTGTTGAAAAAATGAAGGTGGGGC
TGTACATAAATTGATGCAGAAGCAGATGCTGAGAAGAAAATAGGACAAGA
ATCTACATTACTGAAGTCCTCCCAAACAATCACTGCCTAAGAAAGAAATA
GTAAGTTACCAAATTGATCTGCTTAAGCTTTTGTTAACTGATTGATGGCA
ACATTGGGTCCATGCCAAGTCCAGATCCACCAAACGAACCAGGTTCGGCA
TGCTTCACCCTACCAAAATAACGGATATGACGCAAGAGTCTGGCCAGGAA
GGTATTGTGGCATATTGTTGAGCTGTCGCACACAACTGCTACATGTTTGC
ATGCTCTTGTTATGGCAACATTCATTCGCCTACTATCCCCAAGAAAGCCA
ACAGCTCCCAAAGTGTTTGACCGGACCATTGATATAATCACTGCATCAGC
CTCCCGGCCTTGAAAGCTATCAATAGTTGCTACCTCAACACCTGCAGCCT
CTGGAAGCTCATCAAGCCTTTCTCTCAGGAGTTGTACCTGAGCAACGTAA
GGTGATTGCACTGCAATTGCTGATGGGCTGACACCTGCACAAATCAAGGA
GAAAACATGATGCACAACAATTTCTGCTTCCCCTTCATTGTAGAATGAGC
CTGTGCCAGCTAGATCTAGATGCTCTTCACAACCAAGTGATAAAC
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