CN187828

Overview
NameCN187828
Unique NameCN187828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187828 vs. ExPASy Swiss-Prot
Match: FB37_ARATH (F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 2.456e-98
Identity = 175/235 (74.47%), Postives = 202/235 (85.96%), Query Frame = 1
Query:    4 LLPMIPSLFSRFHVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKAN 708
            L+  IPSLFSRF  VTKL+LKCDRRSVS+GD+AL+ IS +CRNL RLKLRACRELTD GM+ FA+NCK LK  SCGSC FGAKG+ AVLD+CS LEELS+KRLRG TD  A E IGPGVAASSLK++CLKELYNGQCFGP+I+GAKNL++LKLFRCSGDWD LLQ ++ +   +VEIHLER+QV+DV L+AIS C  LE +HLVKTPECTN GLAA+AE+CK LRKLHIDGWKAN
Sbjct:   89 LITSIPSLFSRFDSVTKLSLKCDRRSVSIGDEALVKISLRCRNLKRLKLRACRELTDVGMAAFAENCKDLKIFSCGSCDFGAKGVKAVLDHCSNLEELSIKRLRGFTD-IAPEMIGPGVAASSLKSICLKELYNGQCFGPVIVGAKNLKSLKLFRCSGDWDLLLQEMSGKDHGVVEIHLERMQVSDVALSAISYCSSLESLHLVKTPECTNFGLAAIAEKCKRLRKLHIDGWKAN 322          
BLAST of CN187828 vs. ExPASy Swiss-Prot
Match: FBL8_ARATH (Putative F-box/LRR-repeat protein 8 OS=Arabidopsis thaliana GN=FBL8 PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.009e-88
Identity = 155/235 (65.96%), Postives = 192/235 (81.70%), Query Frame = 1
Query:    4 LLPMIPSLFSRFHVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKAN 708
            L+ +IPSLF+RF  VTKL L+ DRRS+ + D+A ++IS +CRNLTRLKLR C E++D G+  F +NC+ LKK+S GSC FG KGMNA+L+ C  LEELSVKRLRGI  GA AE IGPG AA SLK +CLKEL+NGQCF PL+ GAK LR LK+FRCSGDWD++ + V D+V ++VEIHLERIQ++D+GL A+S C  +E++HLVKTP+CTN+GLA VAERCKLLRKLHIDGWK N
Sbjct:  123 LISVIPSLFTRFDSVTKLVLRSDRRSLGICDNAFVMISVRCRNLTRLKLRGCPEISDLGIIGFTENCRSLKKVSFGSCGFGVKGMNALLNTCLGLEELSVKRLRGI--GAGAELIGPGGAAGSLKVICLKELHNGQCFAPLLSGAKGLRILKIFRCSGDWDRVFEAVRDKVNAIVEIHLERIQMSDLGLTALSKCSGVEVLHLVKTPDCTNVGLALVAERCKLLRKLHIDGWKTN 355          
BLAST of CN187828 vs. ExPASy Swiss-Prot
Match: SKIP2_ARATH (F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKIP2 PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 1.889e-82
Identity = 144/231 (62.34%), Postives = 185/231 (80.09%), Query Frame = 1
Query:   16 IPSLFSRFHVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWKAN 708
            + S+F+RF  VTKLAL+CDR+SVS+ D+AL +IS +C NLTR+KLR CRE+TD GM  FAKNCK LKKLS GSC FGAKG+NA+L++C  LEELSVKRLRGI + A    +    ++SSL+++CLKEL NGQ F PL+   + L+TLK+ RC GDWDK+LQ++ +  +SL EIHLER+QV+D+GL+AIS C ++E +H+VKTPEC+N GL  VAERCKLLRKLHIDGW+ N
Sbjct:   96 LTSMFNRFDSVTKLALRCDRKSVSLSDEALAMISVRCLNLTRVKLRGCREITDLGMEDFAKNCKNLKKLSVGSCNFGAKGVNAMLEHCKLLEELSVKRLRGIHEAAELIHLPDDASSSSLRSICLKELVNGQVFEPLLATTRTLKTLKIIRCLGDWDKVLQMIANGKSSLSEIHLERLQVSDIGLSAISKCSNVETLHIVKTPECSNFGLIYVAERCKLLRKLHIDGWRTN 326          
BLAST of CN187828 vs. ExPASy Swiss-Prot
Match: FBL16_ARATH (F-box/LRR-repeat protein 16 OS=Arabidopsis thaliana GN=FBL16 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.023e-76
Identity = 137/233 (58.80%), Postives = 184/233 (78.97%), Query Frame = 1
Query:    4 LLPMIPSLFSRFHVVTKLALKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQVTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWK 702
            +LP +P +F+RF  VTKLAL+CDRRS S+ D+AL ++S +C NL R+KLR CRE+TD GM  FA+NCK L+KLSCGSCTFGAKG+NA+L++C  LEELS+KR+RG+ +   AEPI   ++A SL++V LKEL NGQ FG L +  + L+ +K+ RC G+WD++ ++  +  +SL EI LER+QVTD+GL  IS C +LE +H+VKTP+C+NLGLA+V ERCKLLRKLHIDGW+
Sbjct:   90 ILPFLPCIFNRFDSVTKLALRCDRRSFSLSDEALFIVSIRCSNLIRVKLRGCREITDLGMESFARNCKSLRKLSCGSCTFGAKGINAMLEHCKVLEELSLKRIRGLHE--LAEPIKLSLSA-SLRSVFLKELVNGQVFGSL-VATRTLKKVKIIRCLGNWDRVFEMNGNGNSSLTEIRLERLQVTDIGLFGISKCSNLETLHIVKTPDCSNLGLASVVERCKLLRKLHIDGWR 318          
BLAST of CN187828 vs. ExPASy Swiss-Prot
Match: FBL3_ARATH (F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 61/208 (29.33%), Postives = 99/208 (47.60%), Query Frame = 1
Query:   76 RSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCTFGAKGMNAVL-DNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKT-VCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERIQ-VTDVGLAAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHI 690
            + VSV D+ L  +  K ++L +L +  CR+L+   ++  A +C  L  L   SC+  ++    ++   C  LEEL +       D    + I   ++ SSLK  +CL     G  +  + +G  NLR L L+R  G  D  +  +      L  I++   Q +TD  L ++S C  L+       P  T+ GLAA+A RCK L K+ +
Sbjct:  338 KCVSVTDEGLSSLVMKLKDLRKLDITCCRKLSRVSITQIANSCPLLVSLKMESCSLVSREAFWLIGQKCRLLEELDLTDNE--IDDEGLKSISSCLSLSSLKLGICLNITDKGLSY--IGMGCSNLRELDLYRSVGITDVGISTIAQGCIHLETINISYCQDITDKSLVSLSKCSLLQTFESRGCPNITSQGLAAIAVRCKRLAKVDL 541          
BLAST of CN187828 vs. ExPASy Swiss-Prot
Match: FXL20_MOUSE (F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 63/213 (29.58%), Postives = 95/213 (44.60%), Query Frame = 1
Query:   73 RRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCT-FGAKGMNAVLDNCSTLEELSVKRLRGIT-DGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGA--KNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERI-QVTDVGLAAI-SNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHID 693
            R  + VGD+AL   +Q CRN+  L L  C + TDA  +  +K C  L+ L   SCT      + A+ + C  LE+L++     +T DG  A   G G     LK + LK     +      IGA    L TL L  C    D+ L  +      L  +       +TD  L A+  NC  L I+ + +  + T++G   +A  C  L K+ ++
Sbjct:   99 RGCLGVGDNALRTFAQNCRNIEVLSLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCG----GLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLE 307          
BLAST of CN187828 vs. ExPASy Swiss-Prot
Match: FXL20_HUMAN (F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 63/213 (29.58%), Postives = 95/213 (44.60%), Query Frame = 1
Query:   73 RRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCT-FGAKGMNAVLDNCSTLEELSVKRLRGIT-DGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGA--KNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERI-QVTDVGLAAI-SNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHID 693
            R  + VGD+AL   +Q CRN+  L L  C + TDA  +  +K C  L+ L   SCT      + A+ + C  LE+L++     +T DG  A   G G     LK + LK     +      IGA    L TL L  C    D+ L  +      L  +       +TD  L A+  NC  L I+ + +  + T++G   +A  C  L K+ ++
Sbjct:   99 RGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCG----GLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLE 307          
BLAST of CN187828 vs. ExPASy Swiss-Prot
Match: FXL20_BOVIN (F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 63/213 (29.58%), Postives = 95/213 (44.60%), Query Frame = 1
Query:   73 RRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSCT-FGAKGMNAVLDNCSTLEELSVKRLRGIT-DGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGA--KNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERI-QVTDVGLAAI-SNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHID 693
            R  + VGD+AL   +Q CRN+  L L  C + TDA  +  +K C  L+ L   SCT      + A+ + C  LE+L++     +T DG  A   G G     LK + LK     +      IGA    L TL L  C    D+ L  +      L  +       +TD  L A+  NC  L I+ + +  + T++G   +A  C  L K+ ++
Sbjct:   99 RGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCG----GLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLE 307          
BLAST of CN187828 vs. ExPASy Swiss-Prot
Match: FBL4_ARATH (F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 62/217 (28.57%), Postives = 94/217 (43.32%), Query Frame = 1
Query:   61 LKCDRRSVSVGDDALILISQKCRNLTRLKLRACRELTDAGMSVFAKNCKGLKKLSCGSC-TFGAKGMNAVLDNCSTLEELSVKRLRGITDGAAAEPIGPGVAASSLKTVCLKELYNGQCFGPLIIGAKNLRTLKLFRCSGDWDKLLQLVTDRVTSLVEIHLERI-QVTDVGL-AAISNCLDLEIMHLVKTPECTNLGLAAVAERCKLLRKLHIDGWK 702
            L C R    +G+ AL  I + C++L  L L  C  + D  M   AK C+ LKKL    C   G KG+ ++  +C +L ELS+ R        A   IG G +   L      ++ +      +  G   L  L +       D  L  + +    L ++ L     +TD GL   +  C  LE  H+V  P  T+ G+A V   C  ++K+ I+ WK
Sbjct:  380 LYCQR----IGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYEIGNKGIISIGKHCKSLTELSL-RFCDKVGNKALIAIGKGCSLQQLNVSGCNQISDAG-ITAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNHLVQKCKLLETCHMVYCPGITSAGVATVVSSCPHIKKVLIEKWK 590          
The following BLAST results are available for this feature:
BLAST of CN187828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
FB37_ARATH2.456e-9874.47F-box protein At1g47056 OS=Arabidopsis thaliana GN... [more]
FBL8_ARATH3.009e-8865.96Putative F-box/LRR-repeat protein 8 OS=Arabidopsis... [more]
SKIP2_ARATH1.889e-8262.34F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKI... [more]
FBL16_ARATH2.023e-7658.80F-box/LRR-repeat protein 16 OS=Arabidopsis thalian... [more]
FBL3_ARATH8.366e-1429.33F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana... [more]
FXL20_MOUSE1.023e-1129.58F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbx... [more]
FXL20_HUMAN1.023e-1129.58F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBX... [more]
FXL20_BOVIN1.023e-1129.58F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL2... [more]
FBL4_ARATH2.278e-1128.57F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187828 ID=CN187828; Name=CN187828; organism=Citrus sinensis; type=EST; length=709bp
AGTCTCCTCCCTATGATTCCCTCTCTTTTCTCCCGATTCCACGTCGTCAC
GAAACTCGCTCTCAAATGTGACCGTAGATCCGTGAGCGTTGGGGACGACG
CGCTTATTTTAATTTCTCAAAAGTGCCGCAACCTCACGCGGCTGAAGCTC
CGCGCTTGTCGTGAGCTGACGGACGCCGGAATGTCAGTGTTTGCTAAAAA
CTGCAAGGGCTTGAAGAAGCTCTCCTGTGGATCTTGCACTTTTGGAGCCA
AAGGCATGAACGCAGTGCTCGATAACTGCTCGACTCTCGAAGAGTTATCG
GTTAAGCGGCTTCGTGGAATCACAGATGGAGCCGCGGCTGAGCCGATTGG
ACCTGGCGTGGCTGCCTCTTCGCTTAAAACTGTTTGCCTAAAGGAACTTT
ACAATGGACAGTGTTTTGGTCCCCTAATAATCGGGGCAAAGAATCTAAGA
ACTTTAAAACTTTTTAGGTGCTCTGGCGATTGGGACAAGCTTCTTCAGCT
GGTTACGGATCGGGTCACAAGTTTGGTCGAGATCCATCTGGAGAGAATCC
AAGTCACCGATGTGGGACTCGCTGCCATATCCAATTGTTTAGATCTAGAA
ATTATGCATCTGGTCAAAACTCCAGAGTGCACAAATCTTGGACTCGCCGC
TGTAGCCGAGCGATGTAAACTATTGAGAAAACTCCACATTGATGGATGGA
AAGCTAATC
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