CK938652

Overview
NameCK938652
Unique NameCK938652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK938652 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.631e-28
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 2 
Query:   56 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 418
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CK938652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.631e-2853.72Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004440_B03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938652 ID=CK938652; Name=CK938652; organism=Citrus sinensis; type=EST; length=856bp
GGGGGAAGAAGNNNTTAAAGATTTAGAAANNNGCAGCTAAATTGTAAATT
TAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCCT
GATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGCAGT
CAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTCTC
TGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCGACG
ACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCACCC
CGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAAGC
CCACACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGTGGGGAG
ACTAGGAGCAAGCATCATCACTAGTGGATGATACGCTACAGCGATGTAAA
TGAATGTGATGGGTCACCAACTCACCGGATGAGTTGCCTGTAGTCTGTAG
ATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTCGTTTTGTTA
ATGCTATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAAATG
CTGCTGACTAAAAGTAAATTAAAGACTGTGATGTTTTTATATCATATAAT
TTAATAATTGTATGTGATGTGAGGATTGCTAAGCTGTGGGCGGAGATGAA
AGGTTGCTGGTTTTTGGGTTTAGGACATGTTTTTGATTGTCATTTTGTAA
GAGCCAAGATCATCCCTTCGTGGACGGTCGTGATGAGCATATATGTTTTA
TTATTAATAAATAAGTTGCTTCTCTGAATAAAAAAAAAAAAAAAAAAAAA
AAAAAA
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