CX675526

Overview
NameCX675526
Unique NameCX675526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675526 vs. ExPASy Swiss-Prot
Match: LBD30_ARATH (LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.975e-40
Identity = 74/95 (77.89%), Postives = 82/95 (86.32%), Query Frame = 2
Query:   89 SANNGGGPCGACKFLRRKCVKGCVFAPYFDADQGTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQV 373
            S+  GGGPCGACKFLRRKCV GC+FAPYFD++QG  HFAAVHKVFGASN SKLL  +P HKR DAVVS+C+EA AR RDPIYGCV HIV+LQQQV
Sbjct:   10 SSGGGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQV 104          
BLAST of CX675526 vs. ExPASy Swiss-Prot
Match: LBD19_ARATH (LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.075e-40
Identity = 80/103 (77.67%), Postives = 88/103 (85.44%), Query Frame = 2
Query:   83 MMSAN-NGGG-----PCGACKFLRRKCVKGCVFAPYFDADQGTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQV 373
            MM+ N NGGG     PCGACKFLRRKCVKGCVFAPYFDA+QGT  FAAVHKVFGASNASK+L R+P HKRLDAVV+LCYEAMAR RDP+YG VGH+ +LQ QV
Sbjct:    1 MMTGNLNGGGRGGEGPCGACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKMLLRLPLHKRLDAVVTLCYEAMARIRDPVYGSVGHLFSLQHQV 103          
BLAST of CX675526 vs. ExPASy Swiss-Prot
Match: LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 4.297e-39
Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = 2
Query:   89 SANNGGGPCGACKFLRRKCVKGCVFAPYFDADQGTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQV 373
            S   GGGPCGACKFLRRKCV GC+FAPYFD++QG+ +FAAVHKVFGASN SKLL  IP H+R DAVV++CYEA AR RDPIYGCV HI ALQQQV
Sbjct:   30 SGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQV 124          
BLAST of CX675526 vs. ExPASy Swiss-Prot
Match: LBD31_ARATH (LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 6.860e-37
Identity = 73/98 (74.49%), Postives = 80/98 (81.63%), Query Frame = 2
Query:   80 MMMSANNGGGPCGACKFLRRKCVKGCVFAPYFDADQGTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQV 373
            M  S    GGPCGACKFLRRKCV  CVFAPYFD+ +GT+HF AVHKVFGASNASKLL  IP  +RLDAVV+L YEA+AR RDP+YGCVGHI ALQ QV
Sbjct:    1 MSGSTTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQV 98          
BLAST of CX675526 vs. ExPASy Swiss-Prot
Match: LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.385e-35
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 2
Query:   80 MMMSANNGGGPCGACKFLRRKCVKGCVFAPYFDADQGTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQV 373
            M  S+++ G PCGACKFLRRKC KGCVFAPYF  +QG +HFAA+HKVFGASNASKLLS +P   R +A +++ YEA AR +DPIYGCV HI ALQQQV
Sbjct:    1 MTSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQV 98          
BLAST of CX675526 vs. ExPASy Swiss-Prot
Match: LBD16_ARATH (LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.009e-33
Identity = 65/103 (63.11%), Postives = 76/103 (73.79%), Query Frame = 2
Query:   83 MMSANNG-----GGPCGACKFLRRKCVKGCVFAPYFDADQGTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQVS 376
            M S+ NG     G PCGACKFLRRKC   C+FAPYF ++QG   FAA+HKVFGASN SKLL  +P H R +AVV++ YEA AR  DP+YGCV HI ALQQQV+
Sbjct:    1 MASSGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVA 103          
BLAST of CX675526 vs. ExPASy Swiss-Prot
Match: LBD17_ARATH (LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.339e-32
Identity = 63/90 (70.00%), Postives = 74/90 (82.22%), Query Frame = 2
Query:  104 GGPCGACKFLRRKCVKGCVFAPYFDADQGTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQV 373
            G PCGACKFLRR+CVKGCVFAPYF  +QG +HFAA+H+VFGASNASKLLS +P   R +A  ++ YEA AR +DPIYGCV HI +LQQQV
Sbjct:    5 GSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDRREAATTIYYEAQARRQDPIYGCVSHIFSLQQQV 94          
BLAST of CX675526 vs. ExPASy Swiss-Prot
Match: LBD20_ARATH (LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.284e-32
Identity = 67/101 (66.34%), Postives = 78/101 (77.23%), Query Frame = 2
Query:   83 MMSANNGGG---PCGACKFLRRKCVKGCVFAPYFDADQGTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQVS 376
            M +A  G G   PCGACKFLRRKCV GC+FAP+F +DQG   FAAVHKVFGASN SKLL  IP ++R DAVV++ YEA AR  DP+YGCV  I+ALQQQV+
Sbjct:   39 MAAATTGTGTASPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVA 139          
BLAST of CX675526 vs. ExPASy Swiss-Prot
Match: LBD14_ARATH (LOB domain-containing protein 14 OS=Arabidopsis thaliana GN=LBD14 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.594e-31
Identity = 60/90 (66.67%), Postives = 73/90 (81.11%), Query Frame = 2
Query:  104 GGPCGACKFLRRKCVKGCVFAPYFDADQGTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQV 373
            G PCG CKFLRRKCV+GCVFAPYF  ++G+++FAA+HKVFGASN SKL+S +P H R DAV ++ YEA +R  DPIYGCV  I +LQQQV
Sbjct:    5 GSPCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVRTISYEAHSRLHDPIYGCVSQIFSLQQQV 94          
BLAST of CX675526 vs. ExPASy Swiss-Prot
Match: LBD33_ARATH (LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.031e-29
Identity = 57/90 (63.33%), Postives = 70/90 (77.78%), Query Frame = 2
Query:  104 GGPCGACKFLRRKCVKGCVFAPYFDADQGTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQV 373
            G  CGACKFLRRKC + CVF+PYF  +Q ++HFAAVHKVFGASN SK L  +P H+R  A +++ YEA++R RDP+YGCV HI AL QQV
Sbjct:    5 GSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQRNIAAITISYEALSRMRDPVYGCVAHIFALHQQV 94          
The following BLAST results are available for this feature:
BLAST of CX675526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
LBD30_ARATH2.975e-4077.89LOB domain-containing protein 30 OS=Arabidopsis th... [more]
LBD19_ARATH5.075e-4077.67LOB domain-containing protein 19 OS=Arabidopsis th... [more]
LBD18_ARATH4.297e-3976.84LOB domain-containing protein 18 OS=Arabidopsis th... [more]
LBD31_ARATH6.860e-3774.49LOB domain-containing protein 31 OS=Arabidopsis th... [more]
LBD29_ARATH8.385e-3568.37LOB domain-containing protein 29 OS=Arabidopsis th... [more]
LBD16_ARATH6.009e-3363.11LOB domain-containing protein 16 OS=Arabidopsis th... [more]
LBD17_ARATH1.339e-3270.00LOB domain-containing protein 17 OS=Arabidopsis th... [more]
LBD20_ARATH2.284e-3266.34LOB domain-containing protein 20 OS=Arabidopsis th... [more]
LBD14_ARATH9.594e-3166.67LOB domain-containing protein 14 OS=Arabidopsis th... [more]
LBD33_ARATH4.031e-2963.33LOB domain-containing protein 33 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62G11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62G11-N22-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675526 ID=CX675526; Name=CX675526; organism=Citrus sinensis; type=EST; length=821bp
CTGACTTTCGAGACCCCACAAGAAAGGCGAAGTAATCCTGAGAAGAAGAT
AATAGAGATCGATATATCATCAGAATCAGATGATGATGAGTGCAAACAAC
GGAGGTGGGCCTTGTGGCGCTTGCAAATTTCTTCGGCGAAAGTGCGTAAA
AGGGTGCGTATTTGCACCATATTTTGACGCAGATCAAGGCACCACTCACT
TTGCAGCAGTGCACAAGGTATTTGGCGCTAGCAATGCCTCTAAGCTTCTC
TCCCGAATACCGCCTCACAAGAGGCTTGATGCTGTTGTTTCGCTTTGTTA
TGAAGCTATGGCTAGGACTAGGGATCCCATTTATGGCTGCGTTGGCCACA
TCGTTGCTCTTCAGCAACAGGTCAGTATAACAAGCTAGCCATAACTACAT
ATTGATCCTTTTCTTTTTCTTCTTTTTTTTTTCCCGTTTTCCAACCATCC
ATATTACTAACTTCTCCGTTCCGTTTGTCCGAAGCCACTAGGGTTTCCTT
TTTTATGACATTTATTAGCTTATTATTGAAAACATATTTTGTGTAAGCAA
ATGTTTTCTTCTATGGAGAAGAAATTAAACTGGTACCACGTTTGGCATGC
TAAGATGAATATGAGAGAAATTATACTAAATTAAGCCTGTAAGTTTCAGA
TTCCTGACAAATAATAATCAACGCTTGAATGAAGCGGGGCGATTGATGTA
TTTCTTAAGCTGCTCTTCTAGTGTTTGTCGGGTGGCTAGCTAGAGCTCTA
GATGTAATCTCATACGAGCTCATTGTTTGCTTCAGTACTAGAAGCTAGAA
TCTTATAATTAGATTTGGTAG
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