CX675522

Overview
NameCX675522
Unique NameCX675522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_MLVFP (Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=pol PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.287e-18
Identity = 79/256 (30.86%), Postives = 111/256 (43.36%), Query Frame = 1
Query:   28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPT-RRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYGKACHLPLELEHKAHWALKKLNWDMHAAAEQRKLQLCELDELRLFSYESEKIYKERTKHWHDKHIQHKKFIPGQLVLL--HNTRLRLFLGKLKSRWSSPFKLLKSYP 786
            W IDF    P  +G  Y+LV VD  S WVEA       AK +   L + IF RFG P+V+ +D G  F +K+        GV  K+   Y   S+GQ +  NR IK+ L K+   T  RDW L L  +L+  R     P G++PY I+YG    L           +   + DM        LQ   L  L L  +E  +      +   D+ +    F  G  V +  H T+       L+ RW  P+ +L + P
Sbjct:  918 WEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPL-----------VNFPDPDMAKVTHNPSLQ-AHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWVRRHQTK------NLEPRWKGPYTVLLTTP 1154          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_MLVF5 (Pol polyprotein OS=Friend murine leukemia virus (isolate 57) GN=pol PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.287e-18
Identity = 79/256 (30.86%), Postives = 111/256 (43.36%), Query Frame = 1
Query:   28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPT-RRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYGKACHLPLELEHKAHWALKKLNWDMHAAAEQRKLQLCELDELRLFSYESEKIYKERTKHWHDKHIQHKKFIPGQLVLL--HNTRLRLFLGKLKSRWSSPFKLLKSYP 786
            W IDF    P  +G  Y+LV VD  S WVEA       AK +   L + IF RFG P+V+ +D G  F +K+        GV  K+   Y   S+GQ +  NR IK+ L K+   T  RDW L L  +L+  R     P G++PY I+YG    L           +   + DM        LQ   L  L L  +E  +      +   D+ +    F  G  V +  H T+       L+ RW  P+ +L + P
Sbjct:  918 WEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPL-----------VNFPDPDMAKVTHNPSLQ-AHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWVRRHQTK------NLEPRWKGPYTVLLTTP 1154          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_MLVFF (Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=pol PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.599e-18
Identity = 78/256 (30.47%), Postives = 111/256 (43.36%), Query Frame = 1
Query:   28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPT-RRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYGKACHLPLELEHKAHWALKKLNWDMHAAAEQRKLQLCELDELRLFSYESEKIYKERTKHWHDKHIQHKKFIPGQLVLL--HNTRLRLFLGKLKSRWSSPFKLLKSYP 786
            W IDF    P  +G  Y+LV +D  S WVEA       AK +   L + IF RFG P+V+ +D G  F +K+        GV  K+   Y   S+GQ +  NR IK+ L K+   T  RDW L L  +L+  R     P G++PY I+YG    L           +   + DM        LQ   L  L L  +E  +      +   D+ +    F  G  V +  H T+       L+ RW  P+ +L + P
Sbjct:  918 WEIDFTEVKPGLYGYKYLLVFIDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPL-----------VNFPDPDMAKVTHNPSLQ-AHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWVRRHQTK------NLEPRWKGPYTVLLTTP 1154          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_MLVMO (Gag-Pol polyprotein OS=Moloney murine leukemia virus GN=gag-pol PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.779e-17
Identity = 75/256 (29.30%), Postives = 111/256 (43.36%), Query Frame = 1
Query:   28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPT-RRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYGKACHLPLELEHKAHWALKKLNWDMHAAAEQRKLQLCELDELRLFSYESEKIYKERTKHWHDKHIQHKKFIPGQLVLL--HNTRLRLFLGKLKSRWSSPFKLLKSYP 786
            W IDF    P  +G  Y+LV +D  S W+EA       AK +   L + IF RFG P+V+ +D G  F +K+        G+  K+   Y   S+GQ +  NR IK+ L K+   T  RDW L L  +L+  R     P G++PY I+YG    L           +   + DM        LQ   L  L L  +E  +      +   D+ +    +  G  V +  H T+       L+ RW  P+ +L + P
Sbjct: 1452 WEIDFTEIKPGLYGYKYLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPL-----------VNFPDPDMTRVTNSPSLQ-AHLQALYLVQHEVWRPLAAAYQEQLDRPVVPHPYRVGDTVWVRRHQTK------NLEPRWKGPYTVLLTTP 1688          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_XMRV3 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.629e-17
Identity = 55/150 (36.67%), Postives = 79/150 (52.67%), Query Frame = 1
Query:   28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPT-RRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYG 474
            W +DF    P  +G  Y+LV VD  S WVEA       AK +   L ++IF RFG P+V+ SD G  F +++  +     G+  K+   Y   S+GQ +  NR IK+ L K+   +  RDW L L  +L+  R     P G++PY I+YG
Sbjct: 1450 WEVDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVTKKLLEDIFPRFGMPQVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG 1598          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_MLVRK (Pol polyprotein (Fragment) OS=Radiation murine leukemia virus (strain Kaplan) GN=pol PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.629e-17
Identity = 56/150 (37.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:   28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPT-RRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYG 474
            W IDF    P  +G  Y+LV VD  S WVEA       AK +   L + IF RFG P+V+ +D G  F +++  +     G+  K+   Y   S+GQ +  NR IK+ L K+   T  RDW L L  +L+  R     P G++PY I+YG
Sbjct:  298 WEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG 446          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_MLVRD (Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.629e-17
Identity = 56/150 (37.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:   28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPT-RRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYG 474
            W IDF    P  +G  Y+LV VD  S WVEA       AK +   L + IF RFG P+V+ +D G  F +++  +     G+  K+   Y   S+GQ +  NR IK+ L K+   T  RDW L L  +L+  R     P G++PY I+YG
Sbjct:  913 WEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG 1061          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_MLVAV (Pol polyprotein OS=AKV murine leukemia virus GN=pol PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.629e-17
Identity = 79/256 (30.86%), Postives = 112/256 (43.75%), Query Frame = 1
Query:   28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKV-VNPTRRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYGKACHLPLELEHKAHWALKKLNWDMHAAAEQRKLQLCELDELRLFSYESEKIYKERTKHWHDKHIQHKKFIPGQLVLL--HNTRLRLFLGKLKSRWSSPFKLLKSYP 786
            W IDF    P  +G  Y+LV VD  S WVEA       A+ +   L + IF RFG P+V+ SD G  F +++  +     G+  K+   Y   S+GQ +  NR IK+ L K+ +    RDW L L  +L+  R     P G++PY I+YG     PL   H           DM        LQ   L  L+    E  K   E  +   D+ +    F  G  V +  H T+       L+ RW  P+ +L + P
Sbjct:  913 WEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG--APPPLVNFHDP---------DMSELTNSPSLQ-AHLQALQTVQREIWKPLAEAYRDQLDQPVIPHPFRIGDSVWVRRHQTK------NLEPRWKGPYTVLLTTP 1149          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_XMRV6 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.190e-17
Identity = 55/150 (36.67%), Postives = 79/150 (52.67%), Query Frame = 1
Query:   28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPT-RRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYG 474
            W +DF    P  +G  Y+LV VD  S WVEA       AK +   L ++IF RFG P+V+ SD G  F +++  +     G+  K+   Y   S+GQ +  NR IK+ L K+   +  RDW L L  +L+  R     P G++PY I+YG
Sbjct: 1450 WEVDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMPQVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG 1598          
BLAST of CX675522 vs. ExPASy Swiss-Prot
Match: POL_XMRV4 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag-pol PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.190e-17
Identity = 55/150 (36.67%), Postives = 79/150 (52.67%), Query Frame = 1
Query:   28 WGIDFMGPFPPFFGNLYILVAVDYVSKWVEATALPTNDAKTMVTFLQKNIFSRFGTPRVIISDEGAYFCNKIFAATMMKYGVRHKIATTYHL*SNGQAKVSNREIKKILEKVVNPT-RRDWSLHLHDSLWAYRTAYKTPLGMSPYRIVYG 474
            W +DF    P  +G  Y+LV VD  S WVEA       AK +   L ++IF RFG P+V+ SD G  F +++  +     G+  K+   Y   S+GQ +  NR IK+ L K+   +  RDW L L  +L+  R     P G++PY I+YG
Sbjct: 1450 WEVDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVSKKLLEDIFPRFGMPQVLGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYG 1598          
The following BLAST results are available for this feature:
BLAST of CX675522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
POL_MLVFP4.287e-1830.86Pol polyprotein OS=Friend murine leukemia virus (i... [more]
POL_MLVF54.287e-1830.86Pol polyprotein OS=Friend murine leukemia virus (i... [more]
POL_MLVFF5.599e-1830.47Pol polyprotein OS=Friend murine leukemia virus (i... [more]
POL_MLVMO2.779e-1729.30Gag-Pol polyprotein OS=Moloney murine leukemia vir... [more]
POL_XMRV33.629e-1736.67Gag-Pol polyprotein OS=Xenotropic MuLV-related vir... [more]
POL_MLVRK3.629e-1737.33Pol polyprotein (Fragment) OS=Radiation murine leu... [more]
POL_MLVRD3.629e-1737.33Pol polyprotein OS=Radiation murine leukemia virus... [more]
POL_MLVAV3.629e-1730.86Pol polyprotein OS=AKV murine leukemia virus GN=po... [more]
POL_XMRV66.190e-1736.67Gag-Pol polyprotein OS=Xenotropic MuLV-related vir... [more]
POL_XMRV46.190e-1736.67Gag-Pol polyprotein OS=Xenotropic MuLV-related vir... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62G09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62G09-N18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675522 ID=CX675522; Name=CX675522; organism=Citrus sinensis; type=EST; length=831bp
ATACTGGAAGTAGAAGTTTTTTATGTTTGGGGAATAGATTTCATGGGACC
TTTTCCCCCATTCTTTGGAAACTTATATATCCTTGTTGCTGTAGACTATG
TCTCCAAGTGGGTGGAAGCTACAGCATTACCTACCAATGATGCTAAAACC
ATGGTGACTTTTCTTCAAAAAAATATTTTCTCTAGGTTTGGTACTCCTAG
AGTAATTATTAGTGATGAAGGCGCATATTTTTGCAACAAAATCTTTGCTG
CAACAATGATGAAATATGGAGTCAGACACAAAATAGCAACAACATATCAC
CTATAATCCAATGGTCAGGCTAAAGTGTCCAATAGAGAGATTAAAAAGAT
CTTAGAAAAAGTGGTGAACCCAACAAGGAGGGACTGGTCTTTACATTTGC
ATGACTCTTTATGGGCCTACAGAACAGCATACAAAACCCCACTCGGCATG
TCTCCTTACCGAATTGTTTATGGCAAGGCTTGTCATTTGCCCCTAGAGCT
AGAGCATAAAGCACACTGGGCACTGAAGAAACTAAATTGGGACATGCATG
CTGCAGCAGAACAAAGGAAGCTTCAACTTTGTGAGCTTGATGAATTAAGG
CTGTTTTCATATGAAAGTGAAAAAATTTATAAAGAGAGGACAAAACATTG
GCATGACAAGCATATTCAACACAAGAAGTTCATCCCTGGTCAATTAGTGT
TGCTTCACAATACAAGACTAAGGTTGTTTCTGGGAAAGCTCAAATCACGA
TGGTCTAGCCCATTTAAGCTATTGAAATCTTACCCTCATGGAGCTGTTGA
TCTTTCAGATGAACAAACGGGTCACGAATTC
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