CN187776

Overview
NameCN187776
Unique NameCN187776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187776 vs. ExPASy Swiss-Prot
Match: NUDT4_ARATH (Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.119e-47
Identity = 92/151 (60.93%), Postives = 119/151 (78.81%), Query Frame = 1
Query:  235 VGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLD-INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMK 681
            V +LVSRTGR LQRY   G RQVVGC+PYRYK  KQ ++ +  + ++VL++S+QKGKGMLFPKGGWE DES++EAALRETIEEAGVTG +E E LG+W +KS+ H+  + GYMF LLV  +   WPE  +R R+W+S+ EAR+VCQ+WWM+
Sbjct:   40 VVSLVSRTGRDLQRYDHAGYRQVVGCVPYRYK--KQEVNGVETQVIQVLLVSAQKGKGMLFPKGGWETDESMEEAALRETIEEAGVTGELE-EKLGKWQYKSKRHSIIHDGYMFALLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWMR 187          
BLAST of CN187776 vs. ExPASy Swiss-Prot
Match: NUD17_ARATH (Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.504e-46
Identity = 89/146 (60.96%), Postives = 113/146 (77.40%), Query Frame = 1
Query:  244 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMK 681
            L SRTGR  QRY KGRRQVVGC+PYR+K       I++E +EVLVISSQKG  ++FPKGGWE+DES++EAA RE +EEAGV G VE +L G+W+F S++  T Y+G MFP+LV +QL  WPE++VR R WM+V EAR+ C+ WWMK
Sbjct:    9 LASRTGRQFQRYNKGRRQVVGCVPYRFKLSNDG-KISDE-VEVLVISSQKGHALMFPKGGWELDESVEEAASRECLEEAGVLGNVEHQL-GKWDFLSKSRGTYYEGLMFPMLVTEQLELWPEQHVRQRIWMNVTEAREACRDWWMK 151          
BLAST of CN187776 vs. ExPASy Swiss-Prot
Match: NUD18_ARATH (Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.003e-45
Identity = 89/146 (60.96%), Postives = 114/146 (78.08%), Query Frame = 1
Query:  244 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMK 681
            LVSRTGR  QRY KGRRQVVGCIPYR K +     I++E  EVLVISSQKG  ++FPKGGWE+DES++EAA RE++EEAGV G VE +L G+W+F S++  T Y+G+MFP+LV+++L  WPE+++R R WM V EAR  C+ WWMK
Sbjct:    4 LVSRTGRQSQRYNKGRRQVVGCIPYRLK-ISSDGTISDE-FEVLVISSQKGHALMFPKGGWELDESVEEAASRESLEEAGVVGNVERQL-GKWDFLSKSKGTFYEGFMFPMLVKEELELWPEQHLRQRIWMKVDEARDACRDWWMK 146          
BLAST of CN187776 vs. ExPASy Swiss-Prot
Match: NUD21_ARATH (Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.919e-45
Identity = 96/166 (57.83%), Postives = 119/166 (71.69%), Query Frame = 1
Query:  190 VAQETIVSLVTPENVVGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMK 681
            +  + IV + TP   V +LVSRTGR LQRY   G RQVVGC+PYRYK           ++EVL+IS+QK GKGML PKGGWEIDESI+EAALRETIEEAGVTG +E E LG+W +KS+ H   + G+MFPLLV  Q   WPE   R RKW+S++EA ++CQ+ WM+
Sbjct:   26 IPSKKIVPVPTPSEKVVSLVSRTGRDLQRYNTAGYRQVVGCVPYRYK------KHGGGEIEVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLE-ESLGKWQYKSKRHTMIHDGHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWMR 184          
BLAST of CN187776 vs. ExPASy Swiss-Prot
Match: NUD16_ARATH (Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.413e-36
Identity = 76/156 (48.72%), Postives = 106/156 (67.95%), Query Frame = 1
Query:  241 NLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED---LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDY------QGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMK 681
            +LV+RTGR  QRY+ G R V GCIP+RY  V    D N E    ++VL+ISS  G G+LFPKGGWE DE+++EAA RE +EEAGV GI+  + LG + FKS++H  ++      +  M+ L V+++LA WPE   R+RKW+++ EA + C+H WMK
Sbjct:    3 DLVARTGRLQQRYEDGSRLVAGCIPFRY--VNSDKDGNSESGKVIQVLMISSSSGPGLLFPKGGWENDETVREAAAREAVEEAGVRGIL-MDFLGNYEFKSKSHQDEFSPEGLCKAAMYALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMK 155          
BLAST of CN187776 vs. ExPASy Swiss-Prot
Match: NUD13_ARATH (Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31
Identity = 72/161 (44.72%), Postives = 105/161 (65.22%), Query Frame = 1
Query:  235 VGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQ----SLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD--------YQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMK 681
            + NL +RTGR  QRY    R V GCIPYR    ++    S+D  E  L+VL+ISS     ++FPKGGWE DE++ EAA RE +EEAGV GI+  + LG W F+S++ + +         +GYMF L V+++LA WPE++ R R+W++V EA ++C++ WM+
Sbjct:    1 MSNLSARTGRDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDF-ENKLQVLMISSPNRHDLVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCKGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQ 160          
BLAST of CN187776 vs. ExPASy Swiss-Prot
Match: NUD12_ARATH (Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.981e-31
Identity = 73/160 (45.62%), Postives = 97/160 (60.62%), Query Frame = 1
Query:  244 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED--------LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTD------YQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMK 681
            L SRTGR  QRY    R V GCIPYR        D  EED        LEVL++SS     ++FPKGGWE DE++ EAA RE IEEAGV GI+    LG W F+S++   +       +GYMF L V ++L +WPE+  R R+W++V EA ++C++ WM+
Sbjct:    4 LSSRTGRDRQRYDNNFRLVSGCIPYRL----MKADETEEDSGVDFVNKLEVLMVSSPNRHDLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKGYMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQ 159          
The following BLAST results are available for this feature:
BLAST of CN187776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NUDT4_ARATH3.119e-4760.93Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4... [more]
NUD17_ARATH4.504e-4660.96Nudix hydrolase 17, mitochondrial OS=Arabidopsis t... [more]
NUD18_ARATH1.003e-4560.96Nudix hydrolase 18, mitochondrial OS=Arabidopsis t... [more]
NUD21_ARATH2.919e-4557.83Nudix hydrolase 21, chloroplastic OS=Arabidopsis t... [more]
NUD16_ARATH9.413e-3648.72Nudix hydrolase 16, mitochondrial OS=Arabidopsis t... [more]
NUD13_ARATH4.092e-3144.72Nudix hydrolase 13, mitochondrial OS=Arabidopsis t... [more]
NUD12_ARATH6.981e-3145.63Nudix hydrolase 12, mitochondrial OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187776 ID=CN187776; Name=CN187776; organism=Citrus sinensis; type=EST; length=683bp
AGGCTCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGTC
TCAATATTAAAAGTTTACTTTTGCTTTCAGTTCGTTCAGACGTTAATTGT
TTTTCATCTGAAAGATTGTCTTTCAGCTCCTTTTGTTTTTTGCTGCTGCG
AATATTCCGTAACTAGAGAAGAAAACTATGGTGGCTTTGGTAGCTCAAGA
AACTATTGTATCTCTTGTAACTCCTGAAAATGTTGTGGGCAATTTGGTTT
CTCGCACCGGCAGGCATTTGCAGCGTTACCAAAAAGGCCGTCGCCAAGTT
GTTGGATGCATACCATATAGATATAAATGCGTAAAACAAAGCTTGGATAT
TAATGAGGAGGATCTTGAAGTTCTCGTCATCAGTTCACAGAAAGGCAAAG
GGATGTTGTTCCCAAAGGGAGGCTGGGAAATTGATGAATCCATACAAGAA
GCAGCTTTACGAGAAACCATCGAGGAAGCCGGGGTAACTGGCATCGTTGA
GTGTGAATTATTGGGTGAATGGAATTTCAAGAGCAGAGCACACAACACTG
ACTATCAAGGATACATGTTCCCATTACTTGTTCAGGATCAATTAGCGGAG
TGGCCAGAAAAGAATGTGCGAAGCAGAAAATGGATGAGCGTGGCAGAAGC
TAGAAAAGTTTGTCAGCATTGGTGGATGAAGGA
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