CK938582

Overview
NameCK938582
Unique NameCK938582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK938582 vs. ExPASy Swiss-Prot
Match: CP068_MOUSE (Uncharacterized protein C16orf68 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.457e-22
Identity = 66/199 (33.17%), Postives = 106/199 (53.27%), Query Frame = 2 
Query:  248 VTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISXXXXXXXXXXXXXXSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGSV-HVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEV-QRASVLLAADVIYSDDLTDALFHTLKRLM-PLGSKKVLYLALEKRYNFSLNDLDVVANGYSHFRS 835
            + I+H + + +  VG QVW+  L+LAD+++ +      F G                 + +A TV+ TD G  +L  C +NV LNS + +  G V  V++L+W+            +  +  +SW+  E+ ++    +VLLAA+V Y DDLT+ALF+TL RL+  L +      ++EKR+NF+L  LDV    Y HFR+
Sbjct:  158 IKIEHTMATPLEDVGKQVWRGALLLADYILFRRDL---FQGCTVLELGAGTGLASIVAATMAHTVYCTDVGTDLLAMCQRNVALNSHLTATGGGVVKVKELDWLKD-------NLCTDPKAPFSWSEEEIADLYDHTTVLLAAEVFYDDDLTNALFNTLSRLVHRLKNACTAIFSVEKRFNFTLRHLDVTCEAYDHFRA 346
[Close]
BLAST of CK938582 vs. ExPASy Swiss-Prot
Match: CP068_HUMAN (Uncharacterized protein C16orf68 OS=Homo sapiens GN=C16orf68 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.191e-22
Identity = 65/199 (32.66%), Postives = 104/199 (52.26%), Query Frame = 2 
Query:  248 VTIQHNITSLIPSVGLQVWKAELVLADFVMHKMCTSSDFNGIISXXXXXXXXXXXXXXSRVAWTVFLTDHGNYILDNCAKNVQLNSGVFSHQGS-VHVRDLNWMNPWPPIFSLGNSSASQERYSWNSSELKEV-QRASVLLAADVIYSDDLTDALFHTLKRLM-PLGSKKVLYLALEKRYNFSLNDLDVVANGYSHFRS 835
            + I+H + + +  VG QVW+  L+LAD+++ +      F G  +              + +A TV+ TD G  +L  C +N+ LNS + +  G  V V++L+W+            +  +  +SW+  E+ ++    ++L AA+V Y DDLTDA+F TL RL   L +     L++EKR NF+L  LDV    Y HFRS
Sbjct:  169 IRIEHTMATPLEDVGKQVWRGALLLADYILFRQDL---FRGCTALELGAGTGLASIIAATMARTVYCTDVGADLLSMCQRNIALNSHLAATGGGIVRVKELDWLKD-------DLCTDPKVPFSWSQEEISDLYDHTTILFAAEVFYDDDLTDAVFKTLSRLAHRLKNACTAILSVEKRLNFTLRHLDVTCEAYDHFRS 357
The following BLAST results are available for this feature:
BLAST of CK938582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CP068_MOUSE2.457e-2233.17Uncharacterized protein C16orf68 homolog OS=Mus mu... [more]
CP068_HUMAN4.191e-2232.66Uncharacterized protein C16orf68 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004440_H06 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938582 ID=CK938582; Name=CK938582; organism=Citrus sinensis; type=EST; length=895bp
GGGGGAAATGGACGGCGAAGATTCGTCGGAGGTGATGAGTGAGGTCCACG
TAGGATGCCCACCCCATTCCTCTGGACCCCACATTTCCTGCTTCACCATC
TCCCTTCCTCCTGAAGTTGAACCCAGCAGATACAACGAGCTATTTGAAGC
TGAAGCAGCTGCTTCTGTGCGCGAAGTGCTAACCTTGGATGATGATGGTG
ATCTTGTTCTGCCCAGACGCAGCAAACAGTCTACTCGGTGTTTTAATGTG
ACCATCCAGCACAATATTACGTCATTGATTCCAAGTGTTGGGTTGCAGGT
ATGGAAAGCAGAATTGGTATTAGCTGATTTTGTGATGCATAAGATGTGTA
CCTCGTCTGATTTCAATGGAATCATTTCGTTGGAACTTGGTGCTGGAACA
GGTTTGGCGGGTATATTGCTTTCGCGTGTTGCTTGGACAGTATTTCTAAC
TGACCATGGCAATTACATCCTTGACAACTGTGCCAAGAATGTTCAGCTTA
ATTCTGGAGTTTTCAGTCATCAGGGGTCAGTTCATGTACGGGACCTAAAT
TGGATGAATCCCTGGCCTCCTATATTCAGCTTGGGCAACAGTTCTGCATC
TCAAGAAAGGTACTCTTGGAACTCATCAGAACTCAAAGAAGTCCAAAGAG
CTTCTGTGCTTTTAGCTGCTGATGTAATTTACAGTGATGATCTAACCGAT
GCACTTTTCCATACTTTAAAGAGATTAATGCCACTGGGCTCCAAGAAGGT
ACTATACTTGGCACTGGAAAAGCGTTACAACTTCAGTCTCAATGACCTTG
ATGTTGTGGCTAATGGTTATTCGCATTTCAGAAGCTATATCATGGGGGAG
GGAGAACATCGGAGGTTTGAACGTGAATCCTTTCCTGCTTTTGTG
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