CN187768

Overview
NameCN187768
Unique NameCN187768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2027 contig Csv1_Contig2027:47..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187768 vs. ExPASy Swiss-Prot
Match: TM1L2_MOUSE (TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.569e-20
Identity = 61/174 (35.06%), Postives = 93/174 (53.45%), Query Frame = 2
Query:  227 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS-ERSAPVFTP----PQTHPLTSYPQNFRNP 721
            V   +++AT   L   DW +N+EICD++N      KD ++ +KKR+ G+RN +  +LALT+LET +KNCG   H+ VA ++ +   +VKI   K  P T V++K+L LI  W +AF               EL R G  FP    +  +P+ TP    P+  P  + P++   P
Sbjct:   13 VGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLALTVLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRS-SPDLTGVVHIYEELKRRGIEFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQP 185          
BLAST of CN187768 vs. ExPASy Swiss-Prot
Match: TM1L2_HUMAN (TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.382e-20
Identity = 60/170 (35.29%), Postives = 92/170 (54.12%), Query Frame = 2
Query:  227 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS-ERSAPVFTP----PQTHPLTSYPQN 709
            V   +++AT   L   DW +N+EICD++N      KD ++ +KKR+ G+RN +  +LALT+LET +KNCG   H+ VA ++ +   +VKI   K  P T V++K+L LI  W +AF               EL R G  FP    +  +P+ TP    P+  P  + P++
Sbjct:   13 VGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRS-SPDLTGVVHIYEELKRKGVEFPMADLDALSPIHTPQRSVPEVDPAATMPRS 181          
BLAST of CN187768 vs. ExPASy Swiss-Prot
Match: TM1L2_XENLA (TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.275e-19
Identity = 59/174 (33.91%), Postives = 91/174 (52.30%), Query Frame = 2
Query:  227 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS-ERSAPVFTPPQTHPLTSYPQNFRNPEHQQ 733
            V   +++AT   L   DW +N+EICD++N      KD ++ +KKR+ G+RN +  +LALT+LET +KNCG   H+ V  ++ +   +VKI   K  P T V++K+L LI  W +AF               EL R G  FP    +  +P+ TP ++ P      N    + Q+
Sbjct:   13 VGQCIEKATDGSLQSEDWTLNMEICDIINETEEGPKDAMRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHVQVTHRDFIDGILVKIISPKNNPPTIVQDKVLALIQAWADAFRS-SPDLTGVVHIYEELKRKGIEFPMADLDALSPIHTPQRSVPEVDPATNMHTSQTQK 185          
BLAST of CN187768 vs. ExPASy Swiss-Prot
Match: HGS_RAT (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus GN=Hgs PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.275e-19
Identity = 42/109 (38.53%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  236 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 562
            ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+++KNCG  VH  VA K  + E+ ++ +++ + +V+ KIL LI  W  AF
Sbjct:   11 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKRQVEVNVRNKILYLIQAWAHAF 119          
BLAST of CN187768 vs. ExPASy Swiss-Prot
Match: HGS_MOUSE (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.275e-19
Identity = 42/109 (38.53%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  236 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 562
            ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+++KNCG  VH  VA K  + E+ ++ +++ + +V+ KIL LI  W  AF
Sbjct:   11 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKRQVEVNVRNKILYLIQAWAHAF 119          
BLAST of CN187768 vs. ExPASy Swiss-Prot
Match: HGS_HUMAN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens GN=HGS PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.175e-19
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  236 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 562
            ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+++KNCG  VH  VA K  + E+  + +++ + +V+ KIL LI  W  AF
Sbjct:   11 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 119          
BLAST of CN187768 vs. ExPASy Swiss-Prot
Match: HGS_BOVIN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus GN=HGS PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.175e-19
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  236 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 562
            ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+++KNCG  VH  VA K  + E+  + +++ + +V+ KIL LI  W  AF
Sbjct:   11 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVSSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 119          
BLAST of CN187768 vs. ExPASy Swiss-Prot
Match: TOM1_HUMAN (Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.410e-18
Identity = 54/157 (34.39%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  227 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK---IARKKPDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS-ERSAPVFTPPQT 682
            V   +++AT   L   DWA+N+EICD++N      KD ++ +KKRI G++N    +LALT+LET +KNCG   H+ VA ++ +  ++    + +  P T V +K+L LI +W +AF               +L R G  FP    +  +P+ TP +T
Sbjct:   13 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS-SPDLTGVVTIYEDLRRKGLEFPMTDLDMLSPIHTPQRT 168          
BLAST of CN187768 vs. ExPASy Swiss-Prot
Match: TOM1_MOUSE (Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.405e-18
Identity = 54/157 (34.39%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  227 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK---IARKKPDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS-ERSAPVFTPPQT 682
            V   +++AT   L   DWA+N+EICD++N      KD  + +KKRI G++N    +LALT+LET +KNCG   H+ VA ++ +  ++    + +  P T V +K+L LI +W +AF               +L R G  FP    +  +P+ TP +T
Sbjct:   13 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIMGNKNFHEVMLALTVLETCVKNCGHRFHVLVANQDFVENVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS-SPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPQRT 168          
BLAST of CN187768 vs. ExPASy Swiss-Prot
Match: TOM1_CHICK (Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.140e-18
Identity = 54/154 (35.06%), Postives = 83/154 (53.90%), Query Frame = 2
Query:  227 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK---IARKKPDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS-ERSAPVFTP 673
            V   ++RAT   L G DW++N+EICD++N      KD  + IKKRI G++N    +LALT+LET +KNCG   H+ VA ++ +  ++    + +  P   V +K+L LI +W +AF               +L R G  FP    +  +P+ TP
Sbjct:   13 VGQRIERATDGSLRGEDWSLNMEICDIINETEEGPKDAFRAIKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHILVASQDFVESVLVRTILPKNNPPAIVHDKVLTLIQSWADAFRS-SPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTP 165          
The following BLAST results are available for this feature:
BLAST of CN187768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
TM1L2_MOUSE2.569e-2035.06TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1... [more]
TM1L2_HUMAN4.382e-2035.29TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1... [more]
TM1L2_XENLA1.275e-1933.91TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE... [more]
HGS_RAT1.275e-1938.53Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_MOUSE1.275e-1938.53Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_HUMAN2.175e-1938.53Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_BOVIN2.175e-1938.53Hepatocyte growth factor-regulated tyrosine kinase... [more]
TOM1_HUMAN1.410e-1834.39Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE... [more]
TOM1_MOUSE2.405e-1834.39Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE... [more]
TOM1_CHICK3.140e-1835.06Target of Myb protein 1 OS=Gallus gallus GN=TOM1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187768 ID=CN187768; Name=CN187768; organism=Citrus sinensis; type=EST; length=813bp
GCCGCGTGGGAGTTTTAGAGAGAGAAAGTGGGAGAAAAAGAGAGATAATA
TCAATACTGTTCGATTTAATTGATCGAGAAAGAGATAAATCTTTTCGTTA
CCGGAATATCCGGTGGCATAACGGTAATTAGTTGCGATCTCGGAGCCGGA
ATCGGAGTGATCTTCTTGGAGAGGTGTTTGATTTGATTCGTTTGTTTGGT
TGGGAGAGAGTGAGAGAGCAGAGATGGTGAATTCAATGGTGGATAGAGCC
ACGAGCGACATGTTGATCGGCCCTGATTGGGCCATGAACATCGAGATCTG
TGACATGCTCAATCACGACCCTGGGCAAGCAAAGGATGTTGTTAAAGGTA
TTAAAAAGCGTATTGGAAGTAGGAATTCAAAAGTTCAACTTCTTGCTTTA
ACACTGTTGGAGACAATTATAAAGAATTGTGGGGATATTGTCCATATGCA
TGTTGCAGAGAAAAATGTTCTTCATGAGATGGTGAAAATAGCCAGGAAAA
AGCCCGACACTCACGTCAAAGAGAAGATATTAATTCTAATAGATACTTGG
CAAGAAGCTTTCGGAGGACCTAGGGCAAGATATCCACAGTACTATGCGGC
ATACCAAGAGTTATTGCGCGCTGGGGCAGTGTTCCCTCAGAGGTCTGAGA
GGTCTGCGCCTGTTTTCACACCACCTCAAACACATCCCTTGACTTCTTAT
CCTCAAAATTTTCGAAATCCTGAGCATCAGCAAGAGGCAGCTGAAGCTTC
TGCAGAGTCTGAGTTCCCAACCTTGAGCTTGACAGAAATTCAGAATGCAC
GTGGTATTATGGA
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