CX675514

Overview
NameCX675514
Unique NameCX675514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2146 contig Csv1_Contig2146:85..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675514 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.395e-57
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 2
Query:  260 DLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 442
            DLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct:  111 DLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          

HSP 2 Score: 119.783 bits (299), Expect = 2.395e-57
Identity = 59/98 (60.20%), Postives = 70/98 (71.43%), Query Frame = 3
Query:    3 SDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKD-------------DKSTEDDLKTWDADFVKVDQNTL 257
            SDGE FE++E VALESQTIKHM+EDDC D  IPLPNVTS ILSKVIEYCK+HVEA    +                 S+++DLKTWD++F+KVDQ TL
Sbjct:   12 SDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTL 109          
BLAST of CX675514 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.436e-56
Identity = 59/88 (67.05%), Postives = 70/88 (79.55%), Query Frame = 3
Query:    3 SDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDK---KDDKSTEDDLKTWDADFVKVDQNTL 257
            SDGE+FEVEE VALESQTI HMVEDDC D  +PLPNVTS IL+KVIEYCK+HVEA +      +   +++DDLK WDADF+K+DQ TL
Sbjct:   11 SDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATL 98          

HSP 2 Score: 118.242 bits (295), Expect = 4.436e-56
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 2
Query:  260 DLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 442
            +LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNIKNDF+P+EEEEVRRENQWAFE
Sbjct:  100 ELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of CX675514 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.145e-50
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 3
Query:    3 SDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGS---GDKKDDKSTE-DDLKTWDADFVKVDQNTL 257
            SDGE+FE+EE VA++SQTIKHM+EDDCAD  IPLPNVT  IL+KVIEYCKKHVEA +   GDK    S E D+LK WD++FVKVDQ TL
Sbjct:   13 SDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTL 101          

HSP 2 Score: 99.7525 bits (247), Expect = 1.145e-50
Identity = 45/61 (73.77%), Postives = 54/61 (88.52%), Query Frame = 2
Query:  260 DLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 442
            DLILAANYLNI GLLDLTC+ VAD ++GKTPE++R  FNIKND++P+EE EVR EN+WAFE
Sbjct:  103 DLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of CX675514 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.544e-50
Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 3
Query:    3 SDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGS---GDKKDDKSTED-DLKTWDADFVKVDQNTL 257
            SDGE+FEVEE VA+ESQTIKHM+EDDC D  IPLPNVT  IL+KVIEYCKKHVEA +   GDK    STE+ +LKTWD DFVKVD  TL
Sbjct:   13 SDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTL 101          

HSP 2 Score: 95.9005 bits (237), Expect = 9.544e-50
Identity = 42/61 (68.85%), Postives = 53/61 (86.89%), Query Frame = 2
Query:  260 DLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 442
            DL+ AANYLNI GLLDLTC+ VAD ++GKTP ++R+ FNIKND++P+EE EVR EN+WAFE
Sbjct:  103 DLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of CX675514 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.731e-45
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 2
Query:  260 DLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 442
            +LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct:   92 ELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          

HSP 2 Score: 90.8929 bits (224), Expect = 1.731e-45
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 3
Query:    3 SDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTL 257
            SDG++FEVEE VA++SQTI HMVEDDC    IPL NV S IL KVIEYCKKH        + +  +E+DL  WD  F+ ++Q+T+
Sbjct:   11 SDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKH-----HVDEANPISEEDLNNWDEKFMDLEQSTI 90          
BLAST of CX675514 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.479e-45
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 2
Query:  260 DLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 442
            +LILAANYLNIK L DLTCQTVADMIKGKTPEEIR TFNI+NDF+P+EEE VR+ENQWAFE
Sbjct:   92 ELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          

HSP 2 Score: 90.1225 bits (222), Expect = 8.479e-45
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 3
Query:    3 SDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKK-HVEAGSGDKKDDKSTEDDLKTWDADFVKVDQNTL 257
            SDG++FEVEE VA++SQTI HMVEDDC    IPL NV S IL KVIEYCKK HV+      + +  +E+DL  WD  F+ ++Q+T+
Sbjct:   11 SDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHVD------EANPISEEDLNKWDEKFMDLEQSTI 90          
BLAST of CX675514 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.453e-43
Identity = 45/61 (73.77%), Postives = 53/61 (86.89%), Query Frame = 2
Query:  260 DLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 442
            D++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+NDF+P+EEEE+R+ENQWAFE
Sbjct:   94 DVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          

HSP 2 Score: 98.2117 bits (243), Expect = 3.453e-43
Identity = 48/87 (55.17%), Postives = 66/87 (75.86%), Query Frame = 3
Query:    3 SDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFVK-VDQNTLL 260
            SDGE+F+VEE VA++SQTI HM+EDDC    +P+ NVT  ILSKVIEYCKKHV + S      + ++D+LK WDA+F+K ++Q++ L
Sbjct:   10 SDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVSDS----PTEESKDELKKWDAEFMKALEQSSTL 92          
BLAST of CX675514 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.439e-40
Identity = 44/58 (75.86%), Postives = 56/58 (96.55%), Query Frame = 2
Query:  260 DLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQW 433
            +LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDF+P+EEE++R+EN+W
Sbjct:   98 ELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          

HSP 2 Score: 85.5001 bits (210), Expect = 7.439e-40
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 3
Query:    3 SDGETFEVEETVALESQTIKHMVED-DCADTVIPLPNVTSTILSKVIEYCKKHVEAGS--GDKKDDKSTEDDLKTWDADFVKVDQNTL 257
            SD + FE+E+ +A  S TIK+M+ED   +D+ IPLPNVTSTIL KV++YC+ H +  S  GD K D+   DD+  +D DF KVDQ TL
Sbjct:    9 SDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTL 96          
BLAST of CX675514 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.692e-40
Identity = 44/58 (75.86%), Postives = 56/58 (96.55%), Query Frame = 2
Query:  260 DLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQW 433
            +LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDF+P+EEE++R+EN+W
Sbjct:   98 ELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          

HSP 2 Score: 85.1149 bits (209), Expect = 9.692e-40
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 3
Query:    3 SDGETFEVEETVALESQTIKHMVED-DCADTVIPLPNVTSTILSKVIEYCKKHVEAGS--GDKKDDKSTEDDLKTWDADFVKVDQNTL 257
            SD + FE+E+ +A  S TIK+M+ED   +D  IPLPNVTSTIL KV++YC+ H +  S  GD K D+   DD+  +D DF KVDQ TL
Sbjct:    9 SDEKVFEIEKEIACMSVTIKNMIEDIGESDAPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTL 96          
BLAST of CX675514 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.266e-39
Identity = 46/60 (76.67%), Postives = 53/60 (88.33%), Query Frame = 2
Query:  263 LILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 442
            L+LAANYLNIKGLLDL+ QTVAD IK KTPEEIR+ FNI+NDF+P+EE  VR+EN WAFE
Sbjct:   90 LLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          

HSP 2 Score: 87.0409 bits (214), Expect = 1.266e-39
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 3
Query:    3 SDGETFEVEETVALESQTIKHMVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTEDDLKTWDADFV-KVDQNTL 257
            SDGE+FEVEE VA + + ++HM+EDDC  T +PL NVT  ILS V+EYCKKHV        D++S  D+ KTWD +F+ K DQ T+
Sbjct:   11 SDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHV-------VDEES--DEFKTWDEEFMKKFDQPTV 87          
The following BLAST results are available for this feature:
BLAST of CX675514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SKP1B_ARATH2.395e-5796.72SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH4.436e-5667.05SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH1.145e-5069.66SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH9.544e-5071.91SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH1.731e-4586.89SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH8.479e-4585.25SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK13_ARATH3.453e-4373.77SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
SKP1A_DICDI7.439e-4075.86SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
SKP1B_DICDI9.692e-4075.86SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
ASK14_ARATH1.266e-3976.67SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62G03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62G03-N6-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675514 ID=CX675514; Name=CX675514; organism=Citrus sinensis; type=EST; length=728bp
GTTCGGACGGTGAGACGTTCGAGGTGGAGGAGACGGTGGCCCTCGAGTCG
CAGACAATCAAGCACATGGTGGAGGACGACTGCGCCGACACCGTAATCCC
GCTGCCGAATGTGACGAGCACGATTCTCTCGAAGGTTATCGAGTACTGCA
AGAAGCACGTTGAGGCTGGGTCAGGGGACAAGAAGGACGACAAGTCGACC
GAGGATGATCTCAAGACCTGGGATGCAGACTTCGTCAAGGTTGATCAGAA
TACCCTCTTGACCTAATCTTGGCCGCCAATTACCTGAACATTAAGGGTTT
GCTGGACTTGACCTGCCAAACTGTTGCAGACATGATCAAGGGGAAGACTC
CAGAGGAGATCCGCAAGACCTTCAACATCAAGAATGACTTCTCTCCCGAT
GAAGAAGAGGAGGTTCGGAGAGAGAACCAATGGGCATTCGAGTGAAGGAC
TGAAGTGATGAAGGCTCGGTAATTAATATTTGTGATAGGAATGTCGTTAT
AATGATAGTGGTCTTTTAGTATGTTGCCAGTAGGTGTCTAGTATTGAACA
TCAACATTTCCTTTTGTCGTGAACCTGTGAATGCTGCTCGATATAAATGT
CATTGAACCCTTGTCTATTGCATTATATCTTCGTTTCTTGTCTCGCAATG
CTCTTCTTTCCTGTAAATTATCTGAATTTGACCCTTTTTATACTTTAAAT
CTTCATTTTAGCTTTTAAGTTTAAAAAA
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