CN187766

Overview
NameCN187766
Unique NameCN187766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8233 contig Csv1_Contig8233:27..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN187766 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.398e-83
Identity = 142/176 (80.68%), Postives = 155/176 (88.07%), Query Frame = 2 
Query:   44 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 571
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVDPQGQ LDP KIQDH            +K+GE+ESLN+CDNLADHM+GNVYV F+EE+HAA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K+I
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQI 176
[Close]
BLAST of CN187766 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 2.636e-82
Identity = 142/176 (80.68%), Postives = 153/176 (86.93%), Query Frame = 2 
Query:   44 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 571
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVD QGQ LDPRKIQ+H             K+GEIESLNICDNLADHM+GNVYVQF+EE+ AA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLV 176
[Close]
BLAST of CN187766 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.563e-79
Identity = 136/176 (77.27%), Postives = 150/176 (85.23%), Query Frame = 2 
Query:   44 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 571
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH KPS+SPTLLLSNMY RPDMITPG+D QG  +DP KIQ              SKYGEIESL++CDN ADHM+GNVYVQFREE+ AA AL+ L GR+Y+GRPIIV+FSPV+DFREATCRQYEEN CNRGGYCNFMH+K+I
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEI 176
[Close]
BLAST of CN187766 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.654e-79
Identity = 132/176 (75.00%), Postives = 152/176 (86.36%), Query Frame = 2 
Query:   44 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 571
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPT++L+NMYQRPDMITPGVD QGQ +DP K+Q+H            SK+GE+E+LN+CDNLADHM+GNVYVQFREEE A  A   L GRFY+GRPIIV++SPVTDFREATCRQ+EEN CNRGGYCNFMH+K+I
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQI 176
[Close]
BLAST of CN187766 vs. ExPASy Swiss-Prot
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=2 SV=4)

HSP 1 Score: 215.312 bits (547), Expect = 2.747e-55
Identity = 102/177 (57.63%), Postives = 125/177 (70.62%), Query Frame = 2 
Query:   44 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 571
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P   +   D    A+   ++Q+H              KYGE+E +N+CDNL DH+VGNVYV+FR EE A  A+ +LN R++ G+PI  + SPVTDFREA CRQYE   C RGG+CNFMHLK I
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPI 177
[Close]
BLAST of CN187766 vs. ExPASy Swiss-Prot
Match: U2AF1_HUMAN (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 2.747e-55
Identity = 102/177 (57.63%), Postives = 125/177 (70.62%), Query Frame = 2 
Query:   44 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 571
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P   +   D    A+   ++Q+H              KYGE+E +N+CDNL DH+VGNVYV+FR EE A  A+ +LN R++ G+PI  + SPVTDFREA CRQYE   C RGG+CNFMHLK I
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPI 177
[Close]
BLAST of CN187766 vs. ExPASy Swiss-Prot
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.747e-55
Identity = 102/177 (57.63%), Postives = 125/177 (70.62%), Query Frame = 2 
Query:   44 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 571
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P   +   D    A+   ++Q+H              KYGE+E +N+CDNL DH+VGNVYV+FR EE A  A+ +LN R++ G+PI  + SPVTDFREA CRQYE   C RGG+CNFMHLK I
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPI 177
[Close]
BLAST of CN187766 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.154e-53
Identity = 98/177 (55.37%), Postives = 122/177 (68.93%), Query Frame = 2 
Query:   44 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 571
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P       D     +   ++Q+H              KYGEIE +N+CDNL DH+VGNVYV+FR EE A  A+  LN R++ G+ +  + SPVTDFRE+ CRQYE   C RGG+CNFMHL+ I
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPI 177
[Close]
BLAST of CN187766 vs. ExPASy Swiss-Prot
Match: U2AF4_MOUSE (Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.154e-53
Identity = 98/177 (55.37%), Postives = 122/177 (68.93%), Query Frame = 2 
Query:   44 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 571
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P       D     +   ++Q+H              KYGEIE +N+CDNL DH+VGNVYV+FR EE A  A+  LN R++ G+ +  + SPVTDFRE+ CRQYE   C RGG+CNFMHL+ I
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPI 177
[Close]
BLAST of CN187766 vs. ExPASy Swiss-Prot
Match: U2AF4_BOVIN (Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.969e-53
Identity = 98/177 (55.37%), Postives = 122/177 (68.93%), Query Frame = 2 
Query:   44 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKI 571
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P       D     +   ++Q+H              KYGEIE +N+CDNL DH+VGNVYV+FR EE A  A+  LN R++ G+ +  + SPVTDFRE+ CRQYE   C RGG+CNFMHL+ I
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVVELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPI 177
The following BLAST results are available for this feature:
BLAST of CN187766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
U2AFB_ARATH1.398e-8380.68Splicing factor U2af small subunit B OS=Arabidopsi... [more]
U2AFA_ARATH2.636e-8280.68Splicing factor U2af small subunit A OS=Arabidopsi... [more]
U2AFA_ORYSJ3.563e-7977.27Splicing factor U2af small subunit A OS=Oryza sati... [more]
U2AFB_ORYSJ4.654e-7975.00Splicing factor U2af small subunit B OS=Oryza sati... [more]
U2AF1_MOUSE2.747e-5557.63Splicing factor U2AF 35 kDa subunit OS=Mus musculu... [more]
U2AF1_HUMAN2.747e-5557.63Splicing factor U2AF 35 kDa subunit OS=Homo sapien... [more]
U2AF1_BOVIN2.747e-5557.63Splicing factor U2AF 35 kDa subunit OS=Bos taurus ... [more]
U2AF4_RAT1.154e-5355.37Splicing factor U2AF 26 kDa subunit OS=Rattus norv... [more]
U2AF4_MOUSE1.154e-5355.37Splicing factor U2AF 26 kDa subunit OS=Mus musculu... [more]
U2AF4_BOVIN1.969e-5355.37Splicing factor U2AF 26 kDa subunit OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187766 ID=CN187766; Name=CN187766; organism=Citrus sinensis; type=EST; length=739bp
GCAAAATCATTGAGCACATCAGAGCCTCAGCAGAGAGGGGAGTATGGCGG
AGCACTTAGCTTCAATATTCGGAACCGAAAAGGACAGAGTAAACTGTCCG
TTCTATTTCAAGATCGGCGCGTGCAGGCACGGCGATCGATGCTCTCGGCT
TCATACGAAGCCCAGCATCAGCCCCACACTCCTCCTCTCCAACATGTACC
AACGCCCCGACATGATCACTCCCGGCGTTGACCCGCAGGGCCAGGCCCTT
GACCCTCGCAAGATCCAAGATCACTTCGAGGATTTTTACGAGGATCTGTT
CGAGGAACTAAGCAAGTACGGCGAGATTGAGAGCTTGAACATCTGTGACA
ATTTGGCCGATCACATGGTCGGTAACGTGTATGTTCAGTTTAGAGAAGAA
GAACATGCTGCTAATGCTCTTCGCAATCTCAATGGGAGGTTCTATGCAGG
GCGCCCCATCATTGTCGACTTCTCTCCTGTCACGGATTTTCGGGAAGCTA
CTTGTAGGCAGTACGAGGAAAATGTATGCAATCGAGGTGGTTACTGTAAC
TTTATGCATTTGAAGAAGATTAGCAGGGAGCTGAGGAGGCGATTGTTTGG
CAGAAGCAGGAGAAGACGCAGCCGCAGTCGAAGCAGAAGCCGTAGTCCTC
ATAAGTATCGTGGTGGTTATGAGGAGCGTTCACATGGTGGTGGCCGTGGT
TCTGGTAGAAGAGATGATGACAGGGATCATCGCCTCCAT
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