CN187764

Overview
NameCN187764
Unique NameCN187764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 5.530e-50
Identity = 93/109 (85.32%), Postives = 102/109 (93.58%), Query Frame = 3
Query:    9 ISCHTVEAWNHLIQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 335
            I CHTVEAWN  +QK N+TK L+VVDFTASWCGPCRFIAPFLAELAKKLPNV FLKVDVDELK+VA +WAVE+MPTFMFLKEGKI+DKVVGAKK+ELQQTIAKH+ATAS
Sbjct:    9 IGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMATAS 117          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.323e-48
Identity = 89/106 (83.96%), Postives = 99/106 (93.40%), Query Frame = 3
Query:    9 ISCHTVEAWNHLIQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 326
            I+CHTVE WN  +QK+NE+K LVVVDFTASWCGPCRFIAPF A+LAKKLPNVLFLKVD DELKSVA+DWA++AMPTFMFLKEGKI+DKVVGAKK+ELQ TIAKHLA
Sbjct:    9 IACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.140e-45
Identity = 86/109 (78.90%), Postives = 97/109 (88.99%), Query Frame = 3
Query:    9 ISCHTVEAWNHLIQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 335
            I  HTV+AWN  +QK  + K+L+VVDFTASWCGPC+FIA F AELAKK+P V FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKK+ELQQTIAKH+++ S
Sbjct:    8 IGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHISSTS 116          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.250e-42
Identity = 78/107 (72.90%), Postives = 94/107 (87.85%), Query Frame = 3
Query:   15 CHTVEAWNHLIQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 335
            CH VE WN   +K  ETK+LVVVDFTASWCGPCRFIAP LA++AKK+P+V+FLKVDVDELK+V+ +W+VEAMPTF+F+K+GK VD+VVGAKKEELQQTI KH A A+
Sbjct:   17 CHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPAT 123          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.322e-35
Identity = 63/104 (60.58%), Postives = 87/104 (83.65%), Query Frame = 3
Query:    9 ISCHTVEAWNHLIQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 320
            I+CHT+E WN  ++ +NE+K+L+V+DFTASWC PCRFIAP  AE+AKK  NV+F K+DVDEL++VA ++ VEAMPTF+F+KEG I+D+VVGA K+E+ + + KH
Sbjct:    8 IACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.556e-34
Identity = 63/108 (58.33%), Postives = 84/108 (77.78%), Query Frame = 3
Query:   12 SCHTVEAWNHLIQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 335
            +CH+ E W   +Q++ +TK+LV VDFTA+WCGPCR I P   EL+KK P + FLKVDVDEL+ VA +W VEAMPTF+F+K+GK VDKVVGAKK++L++ +A   A A+
Sbjct:    8 ACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAALAAAAT 115          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.143e-33
Identity = 61/104 (58.65%), Postives = 84/104 (80.77%), Query Frame = 3
Query:    9 ISCHTVEAWNHLIQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 320
            I+CHTV+ WN   QK+ ++ +L+V+DFTASWCGPCR I P+++ELAKK P+V F KVDVD+LK VA ++ VEAMP+F+ LKEG+ V+++VGA+K+EL   IA H
Sbjct:    8 IACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.368e-32
Identity = 63/110 (57.27%), Postives = 83/110 (75.45%), Query Frame = 3
Query:    9 ISCHTVEAWNHLIQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 338
            I+CH  + ++  + K+ E  ++V++DFTASWCGPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:    9 IACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.368e-32
Identity = 63/110 (57.27%), Postives = 83/110 (75.45%), Query Frame = 3
Query:    9 ISCHTVEAWNHLIQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATASA 338
            I+CH  + ++  + K+ E  ++V++DFTASWCGPCRFIAP  AE AKK P  +FLKVDVDELK VA  + VEAMPTF+F+K+G   DKVVGA+K++LQ TI KH+   +A
Sbjct:    9 IACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAA 118          
BLAST of CN187764 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 3.982e-32
Identity = 63/106 (59.43%), Postives = 81/106 (76.42%), Query Frame = 3
Query:    9 ISCHTVEAWNHLIQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLA 326
            IS H++E W   I+++N  K+LVV+DFTASWCGPCR +AP  A+LAKK P  +FLKVDVDELK +A  ++VEAMPTF+F+KEG + D+VVGA KEEL   +  H A
Sbjct:   21 ISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAA 126          
The following BLAST results are available for this feature:
BLAST of CN187764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
TRXH_RICCO5.530e-5085.32Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH2.323e-4883.96Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC3.140e-4578.90Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC3.250e-4272.90Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH5_ARATH1.322e-3560.58Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_PICMA5.556e-3458.33Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_FAGES6.143e-3358.65Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH_ORYSJ1.368e-3257.27Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI1.368e-3257.27Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_WHEAT3.982e-3259.43Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187764 ID=CN187764; Name=CN187764; organism=Citrus sinensis; type=EST; length=547bp
CCTTTAAGATCTCGTGCCACACCGTTGAGGCCTGGAACCACCTTATCCAG
AAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTTCACTGCTTCATG
GTGCGGACCATGCCGTTTCATTGCTCCTTTCTTGGCAGAACTGGCCAAGA
AACTGCCTAATGTCCTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGT
GTTGCCACTGACTGGGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAA
AGAGGGGAAGATTGTGGACAAGGTGGTTGGAGCAAAGAAAGAGGAACTGC
AGCAGACTATTGCCAAGCATCTGGCAACTGCTTCTGCCTAATAAGTTATA
ACTATCCTCCTGCCTTTTGGCTTTAGAGGCTATAGACCTCAATATATGCT
ATCAGTCTGTAATTTACTTATTAGAGTGGTTATGGGATTGTGTTTGTTTG
TGTGTTTGAATATTCCGTAATTTACTGTTCTATGAAGCTCATACTGTGGT
CTTTACAATAATTTAATTTCATATTTGTTGTTGAACCTAATTTTGAT
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