CX675510

Overview
NameCX675510
Unique NameCX675510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675510 vs. ExPASy Swiss-Prot
Match: Y5195_ARATH (UPF0717 protein At5g11950 OS=Arabidopsis thaliana GN=At5g11950 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.724e-27
Identity = 65/190 (34.21%), Postives = 100/190 (52.63%), Query Frame = -2
Query:  170 MSATPNRQFKNICVLSGFTYGKHKEFVEAAIDLGRSIAARKLHLMYGGGNRGL*KMVSEAAFIRGSQVLGIIPRXXXXXXXXXXXXXXXXXXXXGMQERITEMLNHADAFIFLPGDLATLEALITLASWAHLHIHQKLIGLLNVNNFYDGFIAFLNHAIKNFFIPANVKKLFICAHTANELLDLLQAYRP 739
            M      +F+ ICV  G   G  + F +AAI+LG  +  RK+ L+YGGG+ GL  ++S   +  G  VLGIIP+                     M ER   M   A+AFI LPG   T+E L+ + +W+ L IH+K +GLLNV+ +Y+  +A  +  ++  FI    + + + A TA EL++ ++ Y P
Sbjct:    1 MEDNQRSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVAD-MHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKMEEYTP 189          
BLAST of CX675510 vs. ExPASy Swiss-Prot
Match: Y4923_PSEAE (UPF0717 protein PA4923 OS=Pseudomonas aeruginosa GN=PA4923 PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 9.689e-25
Identity = 69/185 (37.30%), Postives = 93/185 (50.27%), Query Frame = -2
Query:  158 KNICVLSGFTYGKHKEFVEAAIDLGRSIAARKLHLMYGGGNRGL*KMVSEAAFIRGSQVLGIIPRXXXXXXXXXXXXXXXXXXXXGMQERITEMLNHADAFIFLPGDLATLEALITLASWAHLHIHQKLIGLLNVNNFYDGFIAFLNHAIKNFFIPANVKKLFICAHTANELLDLLQAYRPEPDP 712
            +++CV  G + G    + EAA+ LGR +A R L L+YGGG  GL   V++AA   G +V+GIIP+                     M  R   M   ADAFI LPG L TLE L  + +W  L  H K +GLL VN FYD  + FL+H +   F+ A  + +     +   LLD L A+ P   P
Sbjct:    4 RSVCVFCGASPGASPVYQEAAVALGRHLAERGLTLVYGGGAVGLMGTVADAALAAGGEVIGIIPQSLQEAEIGHKGLTRLEVVDG-MHARKARMAELADAFIALPGGLGTLEELFEVWTWGQLGYHAKPLGLLEVNGFYDPLLTFLDHLVDERFVRAEHRGMLQRGASPEALLDALAAWTPSVAP 187          
BLAST of CX675510 vs. ExPASy Swiss-Prot
Match: FAS6_RHOFA (UPF0717 protein ORF6 in fasciation locus OS=Rhodococcus fascians GN=fas6 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.083e-19
Identity = 55/176 (31.25%), Postives = 85/176 (48.30%), Query Frame = -2
Query:  218 TMSATPNRQFKNICVLSGFTYGKHKEFVEAAIDLGRSIAARKLHLMYGGGNRGL*KMVSEAAFIRGSQVLGIIPRXXXXXXXXXXXXXXXXXXXXGMQERITEMLNHADAFIFLPGDLATLEALITLASWAHLHIHQKLIGLLNVNNFYDGFIAFLNH-AIKNFFIPANVKKLFIC 742
            T+SA      K++ V  G   G+  ++ + A  +GR+IA  KL L+YGG   GL   ++ AA   G  V+G+IP                      M +R   M    DAFI LPG + T E    + +W+HL +H K   LLN N +Y   ++++ H A++ F  PA   ++ +C
Sbjct:   10 TVSAQARPTPKSVTVFCGAMPGRGTKYGQLAEGMGRAIARSKLRLVYGGARVGLMGTLANAALDSGGTVVGVIPESFTAIPEAAHHGLTELHVVHDMHQRKALMAELGDAFIALPGGVGTAEEFFEVLTWSHLGLHNKPCVLLNDNEYYRPLLSYIEHAAVEGFITPATRSRVIVC 185          
BLAST of CX675510 vs. ExPASy Swiss-Prot
Match: YVDD_BACSU (UPF0717 protein yvdD OS=Bacillus subtilis GN=yvdD PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.693e-17
Identity = 53/179 (29.61%), Postives = 86/179 (48.04%), Query Frame = -2
Query:  176 KNICVLSGFTYGKHKEFVEAAIDLGRSIAARKLHLMYGGGNRGL*KMVSEAAFIRGSQVLGIIPRXXXXXXXXXXXXXXXXXXXXGMQERITEMLNHADAFIFLPGDLATLEALITLASWAHLHIHQKLIGLLNVNNFYDGFIAFLNHAIKNFFIPANVKKLFICAHTANELLDLLQAY 712
            K ICV +G   G ++ +   A +LG  +A + + L+YGG   GL   +++A    G   +G++P                      M ER  +M   AD FI +PG   T E L  +  WA + IHQK IGL NVN +++  +  + ++I+  F   +  KL   +   +EL++ +Q Y
Sbjct:    2 KTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELIEVNG-MHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNY 179          
The following BLAST results are available for this feature:
BLAST of CX675510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
Y5195_ARATH2.724e-2734.21UPF0717 protein At5g11950 OS=Arabidopsis thaliana ... [more]
Y4923_PSEAE9.689e-2537.30UPF0717 protein PA4923 OS=Pseudomonas aeruginosa G... [more]
FAS6_RHOFA6.083e-1931.25UPF0717 protein ORF6 in fasciation locus OS=Rhodoc... [more]
YVDD_BACSU5.693e-1729.61UPF0717 protein yvdD OS=Bacillus subtilis GN=yvdD ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_62G01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62G01-N2-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675510 ID=CX675510; Name=CX675510; organism=Citrus sinensis; type=EST; length=794bp
CTCAATGTTTGAAATGAAAGAATAGAGTTTAGAAGACATCACCTGGGTGG
TGCAACACAGAAGAAAATATTTACAGGCGGAGAGTTAAATCTAATTTGTA
CATCTTACTGCTGCTACTGTTACCATAATTATTTGGACGCTCCAACACAA
AGGTCCAGGGATCTGGCTCCGGTCTATAAGCTTGTAACAGATCAAGTAGC
TCATTAGCAGTGTGAGCACAAATAAAGAGTTTTTTCACATTAGCGGGAAT
GAAAAAGTTTTTTATTGCATGGTTAAGAAATGCGATAAAGCCATCATAAA
AGTTATTGACATTTAACAAACCGATGAGTTTCTGGTGGATGTGCAGATGG
GCCCAAGATGCTAGTGTGATAAGTGCCTCTAGTGTTGCAAGATCTCCTGG
AAGGAAAATAAAAGCATCAGCATGATTAAGCATTTCAGTTATTCTTTCTT
GCATACCTGAGACGACTAACTCTTCTCCAGTTGATGATTCAGACGAACTG
CCTAATGGTTTTAGGACTCTTGGGATGATGCCTAACACTTGACTTCCTCT
GATAAAAGCTGCTTCTGAGACCATTTTTTATAACCCTCGGTTACCTCCTC
CATACATCAAGTGTAATTTTCTCGCTGCTATACTTCGACCAAGATCTATA
GCTGCCTCAACGAACTCTTTATGTTTGCCATAAGTAAATCCAGAAAGCAC
ACAAATGTTCTTGAATTGTCTATTGGGAGTAGCTGACATTGTGATACTTC
TAAAAAACAATTTGTGAGTGCTTGACAAAAAAGAAATCACATTT
back to top