CN187756

Overview
NameCN187756
Unique NameCN187756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN187756 vs. ExPASy Swiss-Prot
Match: IQD14_ARATH (Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.437e-25
Identity = 69/118 (58.47%), Postives = 77/118 (65.25%), Query Frame = 1 
Query:  457 RRE---RPEPTLRYRHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLXXXXXXXXXXXXXMLENQARRQAQHKNDKEAESTLGKWTFGSEAGNHEDWD 801
            RRE   RPEPTL  +HASATKIQ A+RGYMAR+SFRALKGLVRLQGVVRG +VKRQT NAMKYMQ +             MLENQA          + E    KW   SEAGN ++WD
Sbjct:  307 RREIVYRPEPTLPVQHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQIQSRRIKMLENQA----------QVEKDEAKWA-ASEAGN-DNWD 412

HSP 2 Score: 109.383 bits (272), Expect = 2.435e-23
Identity = 61/106 (57.55%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:   28 MGKKGSWFSAIKRVFTPHSKEKLANXXXXXXXXXXXXXXXXXXRHGETNSFIPLFRGPSSIEKILGEAEREQKLVFRXXXXXXXXXXXXFVAQRVASPRVPSQRIT 345
            M KKGSWFSAIKRVFTPHSKEKLAN                  RHGETNSF+P+FR PSSIEKILGEAER+  LVFR                R ASPRV S R T
Sbjct:    1 MVKKGSWFSAIKRVFTPHSKEKLANEPERKSGKEKKKKGFGKLRHGETNSFLPIFREPSSIEKILGEAERDHNLVFRPPTPDRPNPYSASPPPRPASPRVASPRPT 106
The following BLAST results are available for this feature:
BLAST of CN187756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IQD14_ARATH4.437e-2558.47Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0004P08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187756 ID=CN187756; Name=CN187756; organism=Citrus sinensis; type=EST; length=803bp
GAGGGCCGAGACAGTAATGCTCAAAATATGGGAAAGAAAGGGAGTTGGTT
TTCGGCAATTAAGAGGGTTTTTACACCCCATTCCAAAGAAAAACTAGCCA
ATGAATCAGATAAGAAAAGCACCAAAGAAAAGAAAAAGAAAGGGCTAGGG
AAACTAAGGCATGGAGAGACTAATTCATTCATTCCCCTCTTTAGAGGGCC
GAGCAGTATTGAGAAAATTTTGGGGGAAGCTGAAAGAGAGCAGAAATTAG
TATTCAGGCCTCCAACTCCTCCCGAGCAACCCACAACACCACCTTTTGTT
GCTCAGAGAGTTGCTTCTCCAAGGGTTCCTTCTCAAAGGATTACCTCTCC
AAGGGTTGCTTCTCCAAGGGTTGCCTCTCCAAGGCCAGTGTCTCCAAGGG
CAGCTTCTCCAAGGGCTGCTTCTCCAAGAGCTGCTTCTCCTCGAATTGTT
CAACATCGTAGGGAAAGACCAGAACCAACTCTAAGATATCGTCATGCTTC
AGCTACTAAGATCCAAGCAGCCTACCGAGGCTATATGGCAAGGAGGAGCT
TCAGAGCTCTGAAGGGACTGGTGAGGCTTCAAGGAGTGGTGAGGGGACAG
AATGTAAAGCGCCAAACAACAAATGCCATGAAATACATGCAGCTCTTGGT
ACGTGTCCAATCTCAGATTCAGTCTAGGAGGATCCAGATGTTAGAGAACC
AAGCACGGCGTCAGGCACAACACAAGAATGATAAGGAAGCAGAAAGTACC
TTAGGCAAATGGACATTTGGATCTGAGGCAGGAAATCATGAAGACTGGGA
TGC
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