CX675506

Overview
NameCX675506
Unique NameCX675506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675506 vs. ExPASy Swiss-Prot
Match: GEK1_ARATH (D-aminoacyl-tRNA deacylase OS=Arabidopsis thaliana GN=GEK1 PE=1 SV=2)

HSP 1 Score: 410.609 bits (1054), Expect = 4.874e-114
Identity = 192/250 (76.80%), Postives = 218/250 (87.20%), Query Frame = 1
Query:    7 MVILIVATTIDPASINPANALLAMPGWKPGPFFQDDMKSFVNQEVRVLQHNKSIIEEDDLDKRWQEATGEVVGEVIFLSKHTAVSNRPALTVHPIGVPHLREGEPLPQGGRPGWAAPPNPRIGPWLRLLKKIALSHNLVPEFEITLEGTHHGPVTSKPTMFLEIGSTEEYWKRQDAAQVIALLIWDELGLGGGDAVGNWNRESDKNKVLLGIGGGHYAPRHMDIVLKDDVWVAHLLSGYSLPMEDPSQSK 756
            MV LIVATT DPASINPA ALLAMPGW  GP    D+KSF N++ RV+QH++SI++EDDLD RW+EATGEVV EVIFLS+HTAVSNRPALTVHPIGV HL++GE  PQGG+PGWAA P+ RIGPW RLLKK+A +H LVPEFEITLE THHGP+T+KPTMFLEIGSTEEYWKRQDAAQV+ALL+W+ LGLGG + VG W  E+ K KVLLGIGGGHYAPRHMDI LKDD+WV HLLSGYSLPMEDP+Q+K
Sbjct:    1 MVTLIVATTADPASINPAAALLAMPGWTAGPILPPDIKSFSNKQTRVIQHDRSIVKEDDLDLRWEEATGEVVDEVIFLSRHTAVSNRPALTVHPIGVLHLKDGESPPQGGKPGWAALPSTRIGPWFRLLKKMAEAHGLVPEFEITLEATHHGPITNKPTMFLEIGSTEEYWKRQDAAQVMALLMWEGLGLGGSEEVGKWKSETGKRKVLLGIGGGHYAPRHMDIALKDDIWVGHLLSGYSLPMEDPTQTK 250          
BLAST of CX675506 vs. ExPASy Swiss-Prot
Match: DTDA_PYRFU (D-tyrosyl-tRNA(Tyr) deacylase OS=Pyrococcus furiosus GN=dtdA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.839e-21
Identity = 78/255 (30.59%), Postives = 125/255 (49.02%), Query Frame = 1
Query:   16 LIVATTIDPASINPANALLAMPGWKPGPFFQDDMKSFVNQEVRVLQHNKSIIEEDDLDKRWQEATGEVVGEVIFLSKHTAVSNRPALTVHPIGVPHLREGEPLPQGGRPGWAAPPNPRIGPWLRLLKKIALSHNLVPEFEITLEGTHHGPVTSK-PTMFLEIGSTEEYWKRQDAAQVIALLIWDELGLGGGDAVGNWNRESDKNKVLLGIGGGHYAPRHMDIVLKDDVWVAHLLSGYSLPMEDPSQSKVDSESKE 777
            +I+ T ID AS+N    L+   G+       D  + +  +++ +L  N+ +I  D LDK  ++ T      ++F S+H++    P+LT H  G      G+ +  GG+    A   P     L LLK   L+      + +  E THHGP   + P++F+EIGS+EE W    A ++IA  I   L            ++ +K KV LGIGGGHYAP+   + L+ D+  +H+L  Y+ P++     +  S S E
Sbjct:    3 VIMTTKIDKASMNIREKLIENFGFTESNLTFDGNRVYEKEDILILTTNEEMIYYDYLDKEIEKQTKIKPEVIVFASRHSSAKKLPSLTTHVTG----NWGKAM-YGGKDESFAIAFPSAMK-LALLKMHELNDL---GWTVCYEATHHGPSELEVPSLFIEIGSSEEEWVNDRAGEIIAETIMYVL------------KKREKFKVALGIGGGHYAPKQTKVALESDLAFSHILPKYAQPVKKEVILRALSRSTE 236          
BLAST of CX675506 vs. ExPASy Swiss-Prot
Match: DTDA_PYRHO (D-tyrosyl-tRNA(Tyr) deacylase OS=Pyrococcus horikoshii GN=dtdA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.079e-20
Identity = 78/241 (32.37%), Postives = 115/241 (47.72%), Query Frame = 1
Query:   16 LIVATTIDPASINPANALLAMPGWKPGPFFQDDMKSFVNQEVRVLQHNKSIIEEDDLDKRWQEATGEVVGEVIFLSKHTAVSNRPALTVHPIGVPHLREGEPLPQGGRPGWAAPPNPRIGPWLRLLKKIALSHNLVPEFEITLEGTHHGPVTSK-PTMFLEIGSTEEYWKRQDAAQVIALLIWDELGLGGGDAVGNWNRESDKNKVLLGIGGGHYAPRHMDIVLKDDVWVAHLLSGYSLPM 735
            +I+ T +D AS+N  N L+   G+K   +  D    +   +V +L  N  +I  D LD+  +   G     + F S+H++    PALT H  G      G+ +  GG+    A   P     L LLK   L+      + +  E THHGP   + P+ F+EIGS+EE W    A ++IA  I   L         N+ +   K KV LGIGGGHYAP+     L+ D+   H+L  Y+ P+
Sbjct:    3 VIMTTKVDKASMNIMNKLIENFGFKETEYVFDGNPVYKRGDVLILTTNDEMIYYDYLDREIENQLGFKPEIIAFASRHSSKQKLPALTTHVTG----NWGKAM-YGGKDESFAVAIPS-AMKLSLLKMSELND---LGWTVCYEATHHGPTELEVPSFFIEIGSSEEEWINDRAGEIIAETIIYVL--------DNYEKGRSKFKVALGIGGGHYAPKQTKRALEGDLAFGHILPKYAQPV 226          
BLAST of CX675506 vs. ExPASy Swiss-Prot
Match: DTDA_ARCFU (D-tyrosyl-tRNA(Tyr) deacylase OS=Archaeoglobus fulgidus GN=dtdA PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.099e-20
Identity = 74/238 (31.09%), Postives = 115/238 (48.32%), Query Frame = 1
Query:   16 LIVATTIDPASINPANALLAMPGWKPGPFFQDDMKSFVNQEVRVLQHNKSIIEEDDLDKRWQEATGEVVGEVIFLSKHTAVSNRPALTVHPIGVPHLREGEPLPQGGRPGWAAPPNPRIGPWLRLLKKIALSHNLVPEFEITLEGTHHGPVT-SKPTMFLEIGSTEEYWKRQDAAQVIALLIWDELGLGGGDAVGNWNRESDKNKVLLGIGGGHYAPRHMDIVLKDDVWVAHLLSGYS 726
            L+V +  D A  N  + LL    ++       + K +++ E  + +  + +I  D +D++  +       E++F S+H++   R   TVH  G     +      GG+P   A P+P+      L  +  L     PEFE T+E THHGP   SKP+ F EIGSTEE WK ++AA+V+A  + D +     D    WN       V +G+GG HYAPR  +I+L       H  + Y+
Sbjct:    3 LVVCSESDTAGQNIKDNLLTFADFEEKDV--GEFKLYLSDEFYIAETKERLIYADHIDEKLAKYID--FEEILFASRHSSKDGRKIFTVHVSGNVGTADF-----GGKPYSLAKPSPQTMKNYVLALRERLDRK--PEFEFTMEVTHHGPSEISKPSAFYEIGSTEEEWKDREAAEVVAEAMLDAIRAEKMD----WN-------VAVGVGGTHYAPRQTEIMLTTTFTFGHNFAKYT 218          
BLAST of CX675506 vs. ExPASy Swiss-Prot
Match: DTDA_METBU (D-tyrosyl-tRNA(Tyr) deacylase OS=Methanococcoides burtonii (strain DSM 6242) GN=dtdA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.354e-20
Identity = 83/254 (32.68%), Postives = 120/254 (47.24%), Query Frame = 1
Query:    7 MVILIVATTIDPASINPANALLAMPGWK----PGPFFQDDMKSFVNQEVRVLQHNKSIIEEDDLDKRWQEATGEVVGEVIFLSKHTAVSNRPALTVHPIGVPHLREGEPLPQGGRPG---WAAPPNPRIGPWLRLLKKIA-LSHNLVPEFEITLEGTHHGPVT-SKPTMFLEIGSTEEYWKRQDAAQVIALLIWDELGLGGGDAVGNWNRESDKNKVLLGIGGGHYAPRHMDIVLKDDVWVAHLLSGYSLPMED 741
            M I+IV + +DPAS N    LL +  W     PG  F D    + +    +++  +  I +D +D++ +EA G     +IF SKH +   R  LT H  G P   +      GG PG    AAP   R      LL+ +A LS ++   F++++E THHGP     P+++ EIGS+E  W  QDA  ++A  I   L +  G              V +G GGGHYA R  ++VL  D+   H    Y L   D
Sbjct:   12 MSIVIVCSVVDPASQNIKEHLLKLRDWVEMSVPGGIFDDLSAVYQSGNFYIIEVTEHHIYQDGIDRKIEEA-GLDCDLLIFASKHKSADGRRLLTAHFTGNPGSADF-----GGYPGELSMAAPFALRC-----LLRNMAELSESI--GFDVSMESTHHGPSDLDVPSVYAEIGSSEVEWVDQDAGDIVARSI---LSVRSGFC-----------PVGIGFGGGHYAARQSELVLGSDISFGHNFPNYQLQFVD 238          
BLAST of CX675506 vs. ExPASy Swiss-Prot
Match: DTDA_PYRKO (D-tyrosyl-tRNA(Tyr) deacylase OS=Pyrococcus kodakaraensis GN=dtdA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.470e-19
Identity = 75/241 (31.12%), Postives = 112/241 (46.47%), Query Frame = 1
Query:   16 LIVATTIDPASINPANALLAMPGWKPGPFFQDDMKSFVNQEVRVLQHNKSIIEEDDLDKRWQEATGEVVGEVIFLSKHTAVSNRPALTVHPIGVPHLREGEPLPQGGRPGWAAPPNPRIGPWLRLLKKIALSHNLVPEFEITLEGTHHGP-VTSKPTMFLEIGSTEEYWKRQDAAQVIALLIWDELGLGGGDAVGNWNRESDKNKVLLGIGGGHYAPRHMDIVLKDDVWVAHLLSGYSLPM 735
            +++ T +D AS+N    L+   G+K      D    +   +V +L  N+ +I  D LD+  +  TG     + F S+H++    PALT H  G      G  L  GG+    A   P     L LLK   L+      + +  E THHGP     P+ F+EIGS+EE W    A +++A  I   L           N ++ K KV +GIGGGHYAP+     L+ D+   H+   Y+ P+
Sbjct:    3 VVMTTKVDLASMNIREKLIENFGFKEDELLFDGNPVYQKDDVVILTTNQEMIYYDGLDRAIERQTGIKPEIIAFASRHSSKQKLPALTTHVTG----NWGGAL-YGGKDESLAIAQPS-AMKLALLKMNELND---LGWTVCYEATHHGPSELDVPSFFIEIGSSEEEWVNDRAGEIVAETIIYVLE----------NYQNSKFKVAVGIGGGHYAPKQTKRALQTDLAFGHIAPKYAHPL 224          
BLAST of CX675506 vs. ExPASy Swiss-Prot
Match: DTDA_PYRAB (D-tyrosyl-tRNA(Tyr) deacylase OS=Pyrococcus abyssi GN=dtdA PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.731e-19
Identity = 77/242 (31.82%), Postives = 113/242 (46.69%), Query Frame = 1
Query:   16 LIVATTIDPASINPANALLAMPGWKPGPFFQDDMKSFVNQEVRVLQHNKSIIEEDDLDKRWQEATGEVVGEVIFLSKHTAVSNRPALTVHPIGVPHLREGEPLPQGGRPGWA-APPNPRIGPWLRLLKKIALSHNLVPEFEITLEGTHHGPVTSK-PTMFLEIGSTEEYWKRQDAAQVIALLIWDELGLGGGDAVGNWNRESDKNKVLLGIGGGHYAPRHMDIVLKDDVWVAHLLSGYSLPM 735
            +I+ T +D AS+N    L+   G+K      D    +   ++ +L  N  +I  D LD+  ++        + F S+H++    PALT H  G      GE +  G    +A A P+      L LLK   L+      + +  E THHGP   + P+ F+EIGS+EE W    A ++IA  I   L           N E+ K KV LGIGGGHYAP+     L  D+   H+L  Y+ P+
Sbjct:    3 VIMTTKVDKASMNIMQKLIENFGFKETELKFDGNPVYKKDDMVILTTNDEMIYYDYLDREIEKQLSFKPEIIAFASRHSSKQKLPALTTHVTG----NWGEAMYGGKDESFAIAIPSAMK---LALLKMNELNDL---GWTVCYEATHHGPSELEVPSFFIEIGSSEEEWVNDRAGEIIAETIVYVLD----------NYENSKFKVALGIGGGHYAPKQTKRALNSDLAFGHILPKYAQPV 224          
BLAST of CX675506 vs. ExPASy Swiss-Prot
Match: DTDA_AERPE (D-tyrosyl-tRNA(Tyr) deacylase OS=Aeropyrum pernix GN=dtdA PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.319e-18
Identity = 64/177 (36.16%), Postives = 84/177 (47.46%), Query Frame = 1
Query:  202 EATGEVVGEVIFLSKHTAVSNRPALTVHPIGVPHLREGEPLPQGGRPGWAAPPNPRIGPWLRL-LKKIALSHNLVPEFEITLEGTHHGPVT-SKPTMFLEIGSTEEYWKRQDAAQVIALLIWDELGLGGGDAVGNWNRESDKNKVLLGIGGGHYAPRHMDIVLKDDVWVAHLLSGYS 726
            EA       VI LSKH A S R +LTVH  G P     E    GGRP   A   P +   L + L K +    L   +E+TLE THHGP T SKP +F E+GSTEE W+          L W+ L L   +A+    +   +     G GG HY P+H  + L+    + H +  Y+
Sbjct:   61 EAPDPQASAVIVLSKHRAESGRKSLTVHHPGNPT----EDNSLGGRPMELAVAYPALAKALLISLAKASRETGLAESYEVTLEATHHGPTTPSKPVVFAELGSTEEDWRNP--------LGWETLALAVEEAIKTLPQIERECIPAAGFGGTHYVPKHTRLQLESGYCIGHTIPRYA 225          
BLAST of CX675506 vs. ExPASy Swiss-Prot
Match: DTDA_METJA (D-tyrosyl-tRNA(Tyr) deacylase OS=Methanocaldococcus jannaschii GN=dtdA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18
Identity = 67/209 (32.06%), Postives = 105/209 (50.24%), Query Frame = 1
Query:  145 VLQHNKSIIEEDDLDKRWQEATGE---VVGEVIFLSKHTAVSNRPALTVHPIGVPHLREGEPLPQGGRPGWAAPPNPRIGPWLRLLKKIALSHNL------VPEFEITLEGTHHGPVTSK-PTMFLEIGSTEEYWKRQDAAQVIALLIWDELGLGGGDAVGNWNRESDKNKVLLGIGGGHYAPRHMDIVLKDDVWVAHLLSGYSLPMED 741
            +  H K   +  + DK     T E        IFLSKH +++N+P+LTVH  G  +L E      GG P    P +  +   L  LK I  ++        + EF+++ E  HH P   K PT+F+EIGS+E+ W  ++A ++IA  + + +     DA+ + N   DK    +G GGGHYAP+   + L+D  +  +L+  Y+   ED
Sbjct:   17 IANHIKEYFDVFETDKELLSLTAEDLEYADYYIFLSKHKSIANKPSLTVHTPG--NLTEDNTF--GGNPKEVCPCDAVLNTLL--LKNIYKNYKTYYEDGKIGEFDVSFEVVHHSPTGLKAPTVFVEIGSSEKEWILKEAGEIIAKSVLETI-----DAMKSKNY--DKKVRAIGFGGGHYAPKFTKLALEDKYYFGYLVPKYASVSED 212          
BLAST of CX675506 vs. ExPASy Swiss-Prot
Match: DTDA_METM7 (D-tyrosyl-tRNA(Tyr) deacylase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=dtdA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.249e-18
Identity = 60/166 (36.14%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  232 IFLSKHTAVSNRPALTVHPIGVPHLREGEPLPQGGRPGWAAPPNPRIGPWLRLLKKIALSHNLVPE-----FEITLEGTHHGPVTSK-PTMFLEIGSTEEYWKRQDAAQVIALLIWDELGLGGGDAVGNWNRESDKNKVLLGIGGGHYAPRHMDIVLKDDVWVAHL 711
            IFLSKH + S +P LTVH  G  +L E      GG P   +P NP       L+ +    +N + E     FE++ E  HHGP   K P+ F+EIGS+EE W+  DAA++I   + D L           N E ++ + ++GIGGGHY+P+   + L+++ +V +L
Sbjct:   50 IFLSKHASESKKPTLTVHTPG--NLTEDNS--HGGNPEEISPCNPVFNT---LMLQNINKYNEMEEYKELGFEVSFEVLHHGPTDLKTPSAFVEIGSSEEQWQIDDAAEIITNSLIDTLN-------SIQNSEYEEKEKIIGIGGGHYSPKFTKLALREEYYVGYL 201          
The following BLAST results are available for this feature:
BLAST of CX675506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
GEK1_ARATH4.874e-11476.80D-aminoacyl-tRNA deacylase OS=Arabidopsis thaliana... [more]
DTDA_PYRFU2.839e-2130.59D-tyrosyl-tRNA(Tyr) deacylase OS=Pyrococcus furios... [more]
DTDA_PYRHO1.079e-2032.37D-tyrosyl-tRNA(Tyr) deacylase OS=Pyrococcus horiko... [more]
DTDA_ARCFU4.099e-2031.09D-tyrosyl-tRNA(Tyr) deacylase OS=Archaeoglobus ful... [more]
DTDA_METBU5.354e-2032.68D-tyrosyl-tRNA(Tyr) deacylase OS=Methanococcoides ... [more]
DTDA_PYRKO3.470e-1931.12D-tyrosyl-tRNA(Tyr) deacylase OS=Pyrococcus kodaka... [more]
DTDA_PYRAB7.731e-1931.82D-tyrosyl-tRNA(Tyr) deacylase OS=Pyrococcus abyssi... [more]
DTDA_AERPE1.319e-1836.16D-tyrosyl-tRNA(Tyr) deacylase OS=Aeropyrum pernix ... [more]
DTDA_METJA1.722e-1832.06D-tyrosyl-tRNA(Tyr) deacylase OS=Methanocaldococcu... [more]
DTDA_METM72.249e-1836.14D-tyrosyl-tRNA(Tyr) deacylase OS=Methanococcus mar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_62F11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62F11-L22-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675506 ID=CX675506; Name=CX675506; organism=Citrus sinensis; type=EST; length=780bp
CGCGAAATGGTGATCCTAATAGTAGCCACAACGATCGATCCGGCCTCCAT
TAACCCGGCCAACGCCCTTTTGGCCATGCCCGGCTGGAAACCCGGTCCCT
TCTTCCAGGACGATATGAAGAGCTTCGTGAATCAAGAAGTGAGAGTGTTA
CAACACAACAAAAGCATCATAGAAGAGGACGATCTAGACAAGCGTTGGCA
GGAGGCTACCGGCGAAGTCGTTGGCGAAGTTATATTTTTGAGCAAACACA
CTGCCGTTTCGAATCGCCCCGCGCTTACAGTTCATCCAATCGGAGTGCCT
CATTTGCGTGAAGGAGAGCCGCTGCCACAAGGTGGGAGGCCAGGCTGGGC
CGCGCCGCCTAATCCTAGGATAGGCCCGTGGCTCAGACTTTTAAAGAAAA
TTGCTCTCTCTCATAATTTAGTTCCTGAATTTGAGATTACATTAGAGGGT
ACTCACCATGGACCTGTGACTAGTAAGCCAACTATGTTCCTAGAGATTGG
TAGTACAGAAGAATACTGGAAGAGACAGGACGCTGCTCAAGTCATTGCTC
TATTAATTTGGGATGAACTTGGACTTGGAGGAGGCGATGCTGTAGGAAAC
TGGAATAGGGAGAGTGACAAGAACAAGGTTCTTCTTGGAATCGGAGGAGG
ACATTATGCACCTCGGCATATGGACATAGTTCTGAAAGATGATGTTTGGG
TAGCTCACCTACTTTCTGGATATTCCTTGCCTATGGAAGATCCAAGCCAG
TCAAAAGTGGATTCAGAATCGAAAGAAATT
back to top