CX675503

Overview
NameCX675503
Unique NameCX675503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5506 contig Csv1_Contig5506:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUM2_ARATH (Fumarate hydratase 2, chloroplastic OS=Arabidopsis thaliana GN=FUM2 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.136e-59
Identity = 112/128 (87.50%), Postives = 121/128 (94.53%), Query Frame = -1
Query:  426 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 809
            CAQV+GNHV +T+GGSNGHFELNVFKP+IAS LLHS+RL+ DASASFEKNCVRGI+ANRERISKLLHESLMLVTSLNPKIGYDNAAAVAK+AHKEG TLK AA+KLGVL SEEFD LVVPEKMIGPSD
Sbjct:  372 CAQVMGNHVAVTIGGSNGHFELNVFKPVIASALLHSIRLIADASASFEKNCVRGIEANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKRAHKEGCTLKHAAMKLGVLTSEEFDTLVVPEKMIGPSD 499          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUM1_ARATH (Fumarate hydratase 1, mitochondrial OS=Arabidopsis thaliana GN=FUM1 PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 2.136e-59
Identity = 113/128 (88.28%), Postives = 121/128 (94.53%), Query Frame = -1
Query:  426 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 809
            CAQV+GNHV +TVGGSNGHFELNVFKP+IAS LLHS+RL+ DASASFEKNCVRGI+ANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEG TLK+AAL LGVL +EEFD LVVPEKMIGPSD
Sbjct:  365 CAQVMGNHVAVTVGGSNGHFELNVFKPVIASALLHSVRLIADASASFEKNCVRGIEANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGCTLKEAALNLGVLTAEEFDTLVVPEKMIGPSD 492          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMH_MOUSE (Fumarate hydratase, mitochondrial OS=Mus musculus GN=Fh PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.486e-44
Identity = 86/125 (68.80%), Postives = 104/125 (83.20%), Query Frame = -1
Query:  432 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 806
            AQV+GNHV +TVGGSNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK+ A++LG L +E+FD  V P+ M+GP
Sbjct:  382 AQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 506          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMH_MACFA (Fumarate hydratase, mitochondrial OS=Macaca fascicularis GN=FH PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.486e-44
Identity = 86/125 (68.80%), Postives = 104/125 (83.20%), Query Frame = -1
Query:  432 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 806
            AQV+GNHV +TVGGSNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK+ A++LG L +E+FD  V P+ M+GP
Sbjct:  385 AQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 509          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMH_HUMAN (Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.486e-44
Identity = 86/125 (68.80%), Postives = 104/125 (83.20%), Query Frame = -1
Query:  432 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 806
            AQV+GNHV +TVGGSNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK+ A++LG L +E+FD  V P+ M+GP
Sbjct:  385 AQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 509          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMH_DANRE (Fumarate hydratase, mitochondrial OS=Danio rerio GN=fh PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.535e-44
Identity = 87/125 (69.60%), Postives = 103/125 (82.40%), Query Frame = -1
Query:  432 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 806
            AQV+GNHV +TVGGSNGHFELNVFKPMI   +L+S RLLGDAS SF  NCV GI+AN ERI+KL+ ESLMLVT+LNP IGYD AA +AK AHK+G+TLK+AALKLG LN ++F+  V P  M+GP
Sbjct:  384 AQVMGNHVAVTVGGSNGHFELNVFKPMIIKNVLNSARLLGDASVSFTNNCVVGIEANTERINKLMSESLMLVTALNPHIGYDKAAKIAKTAHKDGSTLKEAALKLGFLNEQQFEEWVRPHDMLGP 508          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMH_RAT (Fumarate hydratase, mitochondrial OS=Rattus norvegicus GN=Fh PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.311e-44
Identity = 86/125 (68.80%), Postives = 103/125 (82.40%), Query Frame = -1
Query:  432 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 806
            AQV+GNHV +TVGGSNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK  A++LG L +E+FD  V P+ M+GP
Sbjct:  382 AQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKKTAIELGYLTAEQFDEWVKPKDMLGP 506          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMH_PIG (Fumarate hydratase, mitochondrial OS=Sus scrofa GN=FH PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.643e-43
Identity = 85/125 (68.00%), Postives = 102/125 (81.60%), Query Frame = -1
Query:  432 AQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 806
            AQV+GNHV +TVGGSNGHFELNVFKPM+   +LHS RLLGDA+ SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK  A++LG L +E+FD  V P  M+GP
Sbjct:  341 AQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKATAVELGYLTAEQFDEWVKPRDMLGP 465          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMH_RHIOR (Fumarate hydratase, mitochondrial OS=Rhizopus oryzae GN=FUMR PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.538e-41
Identity = 84/128 (65.62%), Postives = 100/128 (78.12%), Query Frame = -1
Query:  426 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 809
            CAQV+GN+  I+V GSNG FELNVFKP++   L+ S+RL+ DAS SF KNCV GI+AN ++IS +++ESLMLVT+LNP IGYD AA  AKKAHKEGTTLK+AAL LG L SEEFD  V PE MI   D
Sbjct:  367 CAQVMGNNTAISVAGSNGQFELNVFKPVMIKNLIQSIRLISDASISFTKNCVVGIEANEKKISSIMNESLMLVTALNPHIGYDKAAKCAKKAHKEGTTLKEAALSLGYLTSEEFDQWVRPEDMISAKD 494          
BLAST of CX675503 vs. ExPASy Swiss-Prot
Match: FUMH_DICDI (Fumarate hydratase, mitochondrial OS=Dictyostelium discoideum GN=fumH PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.968e-41
Identity = 82/125 (65.60%), Postives = 98/125 (78.40%), Query Frame = -1
Query:  435 CAQVIGNHVPITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 809
            CAQV+GN+  +++ GSNGHFELNVFKP+I   +L S+RL+ DAS SF K+CV GI+A+ +RI +LLHESLMLVT+LNP IGYD AA  AKKAHKE TTLK+A L LG   SEEFD  V P KMIG
Sbjct:  358 CAQVMGNNTTVSIAGSNGHFELNVFKPVIIKNVLSSIRLIADASVSFTKHCVVGIKADEKRIDQLLHESLMLVTALNPYIGYDKAAKAAKKAHKEKTTLKEACLSLGFTTSEEFDKWVDPSKMIG 482          
The following BLAST results are available for this feature:
BLAST of CX675503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUM2_ARATH2.136e-5987.50Fumarate hydratase 2, chloroplastic OS=Arabidopsis... [more]
FUM1_ARATH2.136e-5988.28Fumarate hydratase 1, mitochondrial OS=Arabidopsis... [more]
FUMH_MOUSE1.486e-4468.80Fumarate hydratase, mitochondrial OS=Mus musculus ... [more]
FUMH_MACFA1.486e-4468.80Fumarate hydratase, mitochondrial OS=Macaca fascic... [more]
FUMH_HUMAN1.486e-4468.80Fumarate hydratase, mitochondrial OS=Homo sapiens ... [more]
FUMH_DANRE2.535e-4469.60Fumarate hydratase, mitochondrial OS=Danio rerio G... [more]
FUMH_RAT3.311e-4468.80Fumarate hydratase, mitochondrial OS=Rattus norveg... [more]
FUMH_PIG1.643e-4368.00Fumarate hydratase, mitochondrial OS=Sus scrofa GN... [more]
FUMH_RHIOR1.538e-4165.63Fumarate hydratase, mitochondrial OS=Rhizopus oryz... [more]
FUMH_DICDI9.968e-4165.60Fumarate hydratase, mitochondrial OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62F09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62F09-L18-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675503 ID=CX675503; Name=CX675503; organism=Citrus sinensis; type=EST; length=809bp
TTAGTCCAATACGTATTATTCGAAAAATTTGTTCAATTGAATAAGATCTT
GAGTGCTCATTTTAGGGTTCCTTTTAGCCTCAAAATTATTCTCATTTATT
CTTGTATCTAACATTTCTTTATTACACTGTCGCACAAAAAAATGAGGGAG
GTCTTCCCTTTGTTGGCCTACCAATCGCTATTCTGTCACCACGTGAAATG
ACATATCACCGAAGCCTCCTCCTGGGAAAACCTCAAGAATATAGTTTTTT
TTTGGTTGCCCCTTTCTTTGTTTTTTTTAAATAAAAGCAAAATCACTATT
TGGATCCCTATCAAGTGATTCAGTTGAGGCCTTGAGGGAGAGAAACGGCG
CAGAAACAGATATCCCGCAAAATGATACAAAAGCCAAAAGCAAATCCCAG
GAGTTTAACCCACATAAGCTGGTTAGTCGGATGGGCCAATCATTTTCTCA
GGTACCACAAGATTATCAAATTCTTCACTATTGAGTACTCCGAGTTTCAA
TGCAGCATCCTTAAGTGTAGTTCCCTCCTTGTGAGCCTTCTTGGCAACTG
CCGCAGCATTGTCATAACCAATTTTAGGATTCAAGGATGTGACAAGCATC
AATGACTCGTGCAGCAATTTGGAAATCCTTTCCCTATTAGCTTGAATTCC
TCTCACACAGTTCTTCTCAAAAGAAGCAGATGCATCTCCCAGCAATCTCA
GTGAATGTAGGAGACCACTAGCAATCATTGGCTTGAATACATTTAGTTCA
AAATGGCCATTTGATCCACCCACTGTGATGGGCACATGGTTCCCAATAAC
CTGAGCACA
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