CK938478

Overview
NameCK938478
Unique NameCK938478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length451
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5855 contig Csv1_Contig5855:1347..1796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK938478 vs. ExPASy Swiss-Prot
Match: SBP_ARATH (Putative selenium-binding protein OS=Arabidopsis thaliana GN=At4g14030 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.798e-30
Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    7 TNSLFSAWDCQFYPEPKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 219
            TNSLFSAWD QFYPE  EKGSH++QIDV++EKGG+ INP+FFVDF  EPDGP+LAHEMRYPGGDCTSDIWI
Sbjct:  420 TNSLFSAWDRQFYPEIMEKGSHIIQIDVDTEKGGLTINPDFFVDFGDEPDGPSLAHEMRYPGGDCTSDIWI 490          
BLAST of CK938478 vs. ExPASy Swiss-Prot
Match: SBP1_XENTR (Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.815e-26
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    4 VTNSLFSAWDCQFYPEPKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 219
            VTNSL+S WD QFYP+  ++GS MLQIDV++EKGG+ +NPNF VDF  EP GP LAHE+RYPGGDC+SDIW+
Sbjct:  401 VTNSLYSKWDKQFYPDMIKEGSVMLQIDVDTEKGGLKLNPNFLVDFGKEPGGPVLAHELRYPGGDCSSDIWV 472          
BLAST of CK938478 vs. ExPASy Swiss-Prot
Match: SBP1_DANRE (Selenium-binding protein 1 OS=Danio rerio GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.021e-25
Identity = 50/72 (69.44%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    4 VTNSLFSAWDCQFYPEPKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 219
            VT SL+SAWD QFYP+  ++GS M+QIDVN++ GG+ +N NF VDF AEP+GPALAHE+RYPGGDCTSDIW+
Sbjct:  386 VTTSLYSAWDKQFYPDLIKEGSVMMQIDVNTDTGGLKLNENFLVDFGAEPEGPALAHELRYPGGDCTSDIWL 457          
BLAST of CK938478 vs. ExPASy Swiss-Prot
Match: SBP1B_XENLA (Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-B PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.021e-25
Identity = 49/72 (68.06%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    4 VTNSLFSAWDCQFYPEPKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 219
            VT+S++S WD QFYP+  ++G+ MLQIDV++EKGG+ +NPNF VDF  EPDGP LAHE+RYPGGDC+SDIWI
Sbjct:  401 VTSSIYSIWDKQFYPDMLKEGAVMLQIDVDTEKGGLKLNPNFLVDFGKEPDGPVLAHELRYPGGDCSSDIWI 472          
BLAST of CK938478 vs. ExPASy Swiss-Prot
Match: SBP1A_XENLA (Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-A PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.021e-25
Identity = 50/72 (69.44%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    4 VTNSLFSAWDCQFYPEPKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 219
            VT+SL+S WD QFYP+  ++G+ MLQIDV+++KGG+ +NPNF VDF  EPDGP LAHE+RYPGGDCTSDIWI
Sbjct:  401 VTSSLYSIWDKQFYPDLLKEGAVMLQIDVDTKKGGLKLNPNFLVDFGKEPDGPVLAHEIRYPGGDCTSDIWI 472          
BLAST of CK938478 vs. ExPASy Swiss-Prot
Match: SBP1_PONAB (Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.641e-25
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    4 VTNSLFSAWDCQFYPEPKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 219
            VT SL+SAWD QFYP+   +GS MLQ+DV++ KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  401 VTTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472          
BLAST of CK938478 vs. ExPASy Swiss-Prot
Match: SBP1_HUMAN (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.129e-24
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    4 VTNSLFSAWDCQFYPEPKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 219
            +T SL+SAWD QFYP+   +GS MLQ+DV++ KGG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  401 ITTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472          
BLAST of CK938478 vs. ExPASy Swiss-Prot
Match: SBP1_BOVIN (Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.514e-24
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    4 VTNSLFSAWDCQFYPEPKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 219
            VT SL+SAWD QFYP+   +GS MLQIDV++ +GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIW+
Sbjct:  401 VTTSLYSAWDKQFYPDLIREGSVMLQIDVDTVRGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWL 472          
BLAST of CK938478 vs. ExPASy Swiss-Prot
Match: SBP1_RAT (Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.284e-24
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    4 VTNSLFSAWDCQFYPEPKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 219
            VT SL+SAWD QFYP    +GS MLQIDV++  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  401 VTTSLYSAWDKQFYPNLIREGSVMLQIDVDTANGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472          
BLAST of CK938478 vs. ExPASy Swiss-Prot
Match: SBP1_MOUSE (Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 5.601e-24
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    7 TNSLFSAWDCQFYPEPKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 219
            T SL+SAWD QFYP+   +GS MLQIDV++  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  402 TTSLYSAWDKQFYPDLIREGSMMLQIDVDTVNGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472          
The following BLAST results are available for this feature:
BLAST of CK938478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP_ARATH1.798e-3081.69Putative selenium-binding protein OS=Arabidopsis t... [more]
SBP1_XENTR7.815e-2669.44Selenium-binding protein 1 OS=Xenopus tropicalis G... [more]
SBP1_DANRE1.021e-2569.44Selenium-binding protein 1 OS=Danio rerio GN=selen... [more]
SBP1B_XENLA1.021e-2568.06Selenium-binding protein 1-B OS=Xenopus laevis GN=... [more]
SBP1A_XENLA1.021e-2569.44Selenium-binding protein 1-A OS=Xenopus laevis GN=... [more]
SBP1_PONAB8.641e-2569.44Selenium-binding protein 1 OS=Pongo abelii GN=SELE... [more]
SBP1_HUMAN1.129e-2468.06Selenium-binding protein 1 OS=Homo sapiens GN=SELE... [more]
SBP1_BOVIN2.514e-2468.06Selenium-binding protein 1 OS=Bos taurus GN=SELENB... [more]
SBP1_RAT3.284e-2469.44Selenium-binding protein 1 OS=Rattus norvegicus GN... [more]
SBP1_MOUSE5.601e-2469.01Selenium-binding protein 1 OS=Mus musculus GN=Sele... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_D02 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938478 ID=CK938478; Name=CK938478; organism=Citrus sinensis; type=EST; length=451bp
GGGGTTACCAACTCGCTCTTTAGTGCATGGGATTGTCAATTTTATCCTGA
ACCCAAGGAGAAAGGATCCCACATGCTACAGATTGATGTCAACTCCGAGA
AGGGTGGTATGGCTATCAATCCAAACTTTTTTGTGGACTTTGAAGCTGAA
CCTGATGGTCCTGCCCTAGCTCATGAGATGAGGTATCCTGGTGGTGATTG
CACTTCAGATATATGGATTTAACCATCTTAATCTATTCTGGCAATAAACG
GTGTCCATTATGTCCAGATAGGATACCGCTTTGATTGATGGGGTGATTAC
GTTTGTATGTGGAAGTCAGTGTCCGTTCTGGTTCTGGAATAGCCAGTTTA
AGATAATGGTTTGATTTATGCAGTAAATAAACTTTTTACCTTGTATAACT
GCTCCTGATGAATGTTTTACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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