CX675500

Overview
NameCX675500
Unique NameCX675500
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675500_ssr177 microsatellite CX675500_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2531 contig Csv1_Contig2531:5..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675500 vs. ExPASy Swiss-Prot
Match: SRPK3_HUMAN (Serine/threonine-protein kinase SRPK3 OS=Homo sapiens GN=SRPK3 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.303e-33
Identity = 73/143 (51.05%), Postives = 96/143 (67.13%), Query Frame = 3
Query:  222 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSXEK--CVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR*QGLELNKVREICKYILTGLDYL 644
            Y KGGYH V++GD+FNG RY   RKLGWG FS VWL +D +   +VALK+ KSA  + + A+ EI++L  V D DPS  K   +++LID F+ +G NG H+CMVLE LG  LL+ I  S  QGL +  V+ I + +L GLDYL
Sbjct:   61 YCKGGYHPVKIGDVFNG-RYHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKSAGHYTETAVDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWIIKSNYQGLPVPCVKSIVRQVLHGLDYL 202          
BLAST of CX675500 vs. ExPASy Swiss-Prot
Match: SPK1_CAEEL (Serine/threonine-protein kinase spk-1 OS=Caenorhabditis elegans GN=spk-1 PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.008e-33
Identity = 72/143 (50.35%), Postives = 98/143 (68.53%), Query Frame = 3
Query:  222 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSXEKC--VIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR*QGLELNKVREICKYILTGLDYL 644
            Y++GGYH V +GD+FN  RY   RKLGWG FS VWLA+DT+   +VA+KI KSA  + +AAL EI++L +V   DP+   C  V++L+D F   G NGQH+ MV E LG +LL+LI  S  +GL L +VR+IC+ +L  L Y+
Sbjct:  404 YKRGGYHPVNIGDVFNA-RYHVIRKLGWGHFSTVWLAWDTQDKRFVAMKIVKSAEHYTEAALDEIKLLLSVRSADPNDIGCHKVVQLLDEFTVTGINGQHVAMVFEVLGCNLLKLIIRSNYRGLHLEQVRKICRQVLEALGYM 545          
BLAST of CX675500 vs. ExPASy Swiss-Prot
Match: SPK1_CAEBR (Serine/threonine-protein kinase spk-1 OS=Caenorhabditis briggsae GN=spk-1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.929e-33
Identity = 73/143 (51.05%), Postives = 96/143 (67.13%), Query Frame = 3
Query:  222 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSXEKC--VIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR*QGLELNKVREICKYILTGLDYL 644
            Y++GGYH V +GD+FN  RY   RKLGWG FS VWLA+DT+   + A+KI KSA  + +AAL EI++L +V   DP    C  V++L+D F   G NGQH+ MV E LG +LL+LI  S  +GL L +VR+ICK IL  L Y+
Sbjct:  116 YKRGGYHPVNIGDVFNS-RYHVIRKLGWGHFSTVWLAWDTQEKRFTAMKIVKSAEHYTEAALDEIKLLLSVRGADPEDTGCHKVVQLLDEFTVTGINGQHVAMVFEVLGCNLLKLIIRSNYRGLHLEQVRKICKQILEALRYM 257          
BLAST of CX675500 vs. ExPASy Swiss-Prot
Match: SRPK3_MOUSE (Serine/threonine-protein kinase SRPK3 OS=Mus musculus GN=Srpk3 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.131e-33
Identity = 73/143 (51.05%), Postives = 96/143 (67.13%), Query Frame = 3
Query:  222 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSXEK--CVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR*QGLELNKVREICKYILTGLDYL 644
            Y KGGY+ V++GDLFNG RY   RKLGWG FS VWL +D +   +VALK+ KSA  + + A+ EI++L  V D DPS  K   +++LID F+ +G NG H+CMVLE LG  LL+ I  S  QGL +  V+ I + +L GLDYL
Sbjct:   60 YCKGGYYPVKIGDLFNG-RYHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKSAGHYTETAVDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWIIKSNYQGLPVPCVKSIVRQVLHGLDYL 201          
BLAST of CX675500 vs. ExPASy Swiss-Prot
Match: SRPK1_PONAB (Serine/threonine-protein kinase SRPK1 OS=Pongo abelii GN=SRPK1 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 8.752e-33
Identity = 72/143 (50.35%), Postives = 97/143 (67.83%), Query Frame = 3
Query:  222 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPS--XEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR*QGLELNKVREICKYILTGLDYL 644
            Y KGGYH V++GDLFNG RY   RKLGWG FS VWL++D +   +VA+K+ KSA  + + AL EI +L +V + DP+    + V++L+D FK +G NG H+CMV E LG  LL+ I  S  QGL L  V++I + +L GLDYL
Sbjct:   62 YCKGGYHLVKIGDLFNG-RYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYL 203          
BLAST of CX675500 vs. ExPASy Swiss-Prot
Match: SRPK1_HUMAN (Serine/threonine-protein kinase SRPK1 OS=Homo sapiens GN=SRPK1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 8.752e-33
Identity = 72/143 (50.35%), Postives = 97/143 (67.83%), Query Frame = 3
Query:  222 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPS--XEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR*QGLELNKVREICKYILTGLDYL 644
            Y KGGYH V++GDLFNG RY   RKLGWG FS VWL++D +   +VA+K+ KSA  + + AL EI +L +V + DP+    + V++L+D FK +G NG H+CMV E LG  LL+ I  S  QGL L  V++I + +L GLDYL
Sbjct:   62 YCKGGYHLVKIGDLFNG-RYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYL 203          
BLAST of CX675500 vs. ExPASy Swiss-Prot
Match: SRPK2_MOUSE (Serine/threonine-protein kinase SRPK2 OS=Mus musculus GN=Srpk2 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.143e-32
Identity = 73/143 (51.05%), Postives = 95/143 (66.43%), Query Frame = 3
Query:  222 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPS--XEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR*QGLELNKVREICKYILTGLDYL 644
            Y KGGYH V++GDLFNG RY   RKLGWG FS VWL +D +   +VA+K+ KSA  + + AL EI++L  V + DPS   +  V++LID FK +G NG H+CMV E LG  LL+ I  S  QGL +  V+ I + +L GLDYL
Sbjct:   61 YCKGGYHPVKIGDLFNG-RYHVIRKLGWGHFSTVWLCWDMQGKRFVAMKVVKSAQHYTETALDEIKLLKCVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWIIKSNYQGLPVRCVKSIIRQVLQGLDYL 202          
BLAST of CX675500 vs. ExPASy Swiss-Prot
Match: SRPK2_HUMAN (Serine/threonine-protein kinase SRPK2 OS=Homo sapiens GN=SRPK2 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.143e-32
Identity = 73/143 (51.05%), Postives = 95/143 (66.43%), Query Frame = 3
Query:  222 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPS--XEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR*QGLELNKVREICKYILTGLDYL 644
            Y KGGYH V++GDLFNG RY   RKLGWG FS VWL +D +   +VA+K+ KSA  + + AL EI++L  V + DPS   +  V++LID FK +G NG H+CMV E LG  LL+ I  S  QGL +  V+ I + +L GLDYL
Sbjct:   63 YCKGGYHPVKIGDLFNG-RYHVIRKLGWGHFSTVWLCWDMQGKRFVAMKVVKSAQHYTETALDEIKLLKCVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWIIKSNYQGLPVRCVKSIIRQVLQGLDYL 204          
BLAST of CX675500 vs. ExPASy Swiss-Prot
Match: SRPK1_MOUSE (Serine/threonine-protein kinase SRPK1 OS=Mus musculus GN=Srpk1 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.143e-32
Identity = 72/143 (50.35%), Postives = 97/143 (67.83%), Query Frame = 3
Query:  222 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPSXE--KCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR*QGLELNKVREICKYILTGLDYL 644
            Y KGGYH V++GDLFNG RY   RKLGWG FS VWL++D +   +VA+K+ KSA  + + AL EI +L +V + DP+    + V++L+D FK +G NG H+CMV E LG  LL+ I  S  QGL L  V++I + +L GLDYL
Sbjct:   62 YCKGGYHLVKIGDLFNG-RYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNGEMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYL 203          
BLAST of CX675500 vs. ExPASy Swiss-Prot
Match: DSK1_SCHPO (Protein kinase dsk1 OS=Schizosaccharomyces pombe GN=dsk1 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 8.192e-31
Identity = 64/143 (44.76%), Postives = 92/143 (64.34%), Query Frame = 3
Query:  222 YRKGGYHAVRVGDLFNGGRYIAQRKLGWGQFSIVWLAYDTRTSSYVALKIQKSAAQFAQAALHEIEVLSAVADGDPS--XEKCVIRLIDHFKHAGPNGQHLCMVLEFLGDSLLRLIKYSR*QGLELNKVREICKYILTGLDYL 644
            Y  GGYH V +G+ F+  RY+ +RKLGWG FS VWLAYD      VALK+ +SA  + + ++ EI +L  + +GD     +K +I L+D+F H GPNG H+CMV E LG++LL LI+    +G+ +  V++I   +L  LDYL
Sbjct:   62 YHYGGYHPVYIGEEFHHRRYVVERKLGWGHFSTVWLAYDRAAKRRVALKVVRSAEHYRETSIDEIRILQKIREGDEKHLGKKHIISLLDYFVHRGPNGAHVCMVFEVLGENLLSLIQSYGHRGVPVGIVKQIAYQLLIALDYL 204          
The following BLAST results are available for this feature:
BLAST of CX675500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SRPK3_HUMAN2.303e-3351.05Serine/threonine-protein kinase SRPK3 OS=Homo sapi... [more]
SPK1_CAEEL3.008e-3350.35Serine/threonine-protein kinase spk-1 OS=Caenorhab... [more]
SPK1_CAEBR3.929e-3351.05Serine/threonine-protein kinase spk-1 OS=Caenorhab... [more]
SRPK3_MOUSE5.131e-3351.05Serine/threonine-protein kinase SRPK3 OS=Mus muscu... [more]
SRPK1_PONAB8.752e-3350.35Serine/threonine-protein kinase SRPK1 OS=Pongo abe... [more]
SRPK1_HUMAN8.752e-3350.35Serine/threonine-protein kinase SRPK1 OS=Homo sapi... [more]
SRPK2_MOUSE1.143e-3251.05Serine/threonine-protein kinase SRPK2 OS=Mus muscu... [more]
SRPK2_HUMAN1.143e-3251.05Serine/threonine-protein kinase SRPK2 OS=Homo sapi... [more]
SRPK1_MOUSE1.143e-3250.35Serine/threonine-protein kinase SRPK1 OS=Mus muscu... [more]
DSK1_SCHPO8.192e-3144.76Protein kinase dsk1 OS=Schizosaccharomyces pombe G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_62F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62F07-L14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675500 ID=CX675500; Name=CX675500; organism=Citrus sinensis; type=EST; length=644bp
TCTTGTGTTCGTATTGAATTTAATTCAACCCACAGGGCTCGCAAAAAAGC
AGGAAAATAAAAAAAAAAAGTATCAAATTTATCAGAATAACATTTTGGAA
ACCAAACTTTCCAAATACGCTCCATCAATCAATTGCAGCTGCAATCAAAT
CAGGCGGTGGTTATACGATGTCGTGTTCGTCGTCGTCGGGCTCTGAGGAT
GACGATGAGGGAATCGACTCCTACCGTAAAGGCGGTTATCATGCCGTTAG
AGTCGGCGATCTGTTTAACGGTGGCCGGTACATAGCTCAGAGGAAGCTTG
GGTGGGGCCAGTTTTCCATCGTCTGGCTTGCTTACGACACTCGAACTTCT
AGTTATGTTGCTCTTAAGATTCAGAAAAGTGCAGCACAGTTTGCTCAAGC
GGCTCTTCATGAGATTGAAGTCCTTTCCGCTGTTGCTGATGGTGACCCCT
CANATGAGAAGTGTGTTATAAGACTGATTGACCACTTTAAGCATGCAGGT
CCNAATGGGCAGCATCTTTGCATGGTCCTTGAATTTCTTGGTGATAGCTT
ACTCCGGCTGATCAAATATAGTCGCTAACAAGGACTTGAGTTGAATAAAG
TTAGGGAAATCTGCAAATACATTTTGACAGGTCTGGATTACTTA
back to top