CX675498

Overview
NameCX675498
Unique NameCX675498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1826 contig Csv1_Contig1826:22..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675498 vs. ExPASy Swiss-Prot
Match: NFYA1_ARATH (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.669e-16
Identity = 70/205 (34.15%), Postives = 96/205 (46.83%), Query Frame = 2
Query:  140 MPAKPD-ENRQLDRGAQSVSQSAIYSQRPWWSGTGTG----ASLAEAAAPKSSREQPNGSVVNGA-TYSQDG-INGQEHAHLKHIPSSTPLTMGER--LEQNSQM---------------ELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKVIKAR 682
            M +KP  EN +      +V Q  +Y++ PWW     G    A  +   +  SS + PNGS  N   + S+DG +NG+     K   ++T     +   +E N                  ELVGH I     PY DP + G++  Y  Q +      GM + R           VYVNAKQY GILRRR++RAKAELE+KVI+ R
Sbjct:    1 MQSKPGRENEEEVNNHHAVQQPMMYAE-PWWKNNSFGVVPQARPSGIPSNSSSLDCPNGSESNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDPALSIRNMHDQPLVQPPELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDR 204          
BLAST of CX675498 vs. ExPASy Swiss-Prot
Match: NFYA9_ARATH (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 63/198 (31.82%), Postives = 95/198 (47.98%), Query Frame = 2
Query:  140 MPAKPDEN-RQLDRGAQSVSQSAIYSQRPWW-SGTGTGASLAEAAAPKSSREQPNGSVVNGATYSQDGINGQEHAHLKHIPSSTPLTMGERLEQNSQM------------ELVGHSIV-LTSYPYTDPQHVGVITPYV--PQAMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKVIKAR 682
            M +K D    ++D        S+I S  PW  +     A+ +  A  KSS+        NG   S+   N     + +   +++P + G+  ++N +             +LVGH++   +S PY DP + GV+  Y   P   +P    GM  +R           V+VNAKQY+ ILRRRQ+RAKAELEKK+IK+R
Sbjct:    6 MHSKSDSGGNKVDSEVHGTVSSSINSLNPWHRAAAACNANSSVEAGDKSSKSIALALESNG---SKSPSNRDNTVNKESQVTTSPQSAGDYSDKNQESLHHGITQPPPHPQLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVP--YGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSR 198          
The following BLAST results are available for this feature:
BLAST of CX675498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NFYA1_ARATH1.669e-1634.15Nuclear transcription factor Y subunit A-1 OS=Arab... [more]
NFYA9_ARATH1.323e-1331.82Nuclear transcription factor Y subunit A-9 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_62F06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62F06-L12-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675498 ID=CX675498; Name=CX675498; organism=Citrus sinensis; type=EST; length=682bp
CTTAAGGTTGCAGAGAAATACAGACGAAAATAAAACGAATCAAAGTCGAT
GACTTTCTTTTAGAATCTCTATGCTCTGCTTCTCATCTCACAGTGCAGGA
TTAGGCTGTTTATACTATTAGAGGATTAGGTTGTGAATGATGCCGGCAAA
ACCTGATGAAAATCGGCAGTTAGACCGTGGTGCTCAGAGTGTCTCGCAAT
CAGCTATCTATTCCCAGCGGCCTTGGTGGAGTGGGACAGGAACTGGTGCC
TCCTTAGCTGAAGCAGCAGCTCCTAAATCTTCAAGGGAACAACCAAATGG
TTCTGTTGTAAATGGTGCCACCTATTCACAAGATGGGATTAATGGACAAG
AACATGCGCATCTCAAACATATTCCATCCTCAACACCTCTNACTATGGGC
GAACGCCTTGAACAAAATTCCCAAATGGAGCTAGTTGGTCACTCAATTGT
TTTGACATCATATCCATATACAGATCCACAACATGTTGGAGTAATTACCC
CCTATGTGCCACAAGCTATGATTCCTCCTCAGTTATATGGAATGCATCAA
GCAAGAATGCCTTTGCCTCTCGAAATGGAAGAGGAGCCTGTTTATGTGAA
TGCAAAACAGTATAGAGGTATTTTGAGACGAAGACAGTCGCGTGCTAAGG
CTGAGCTTGAAAAGAAAGTGATTAAAGCGAGA
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