CK938449

Overview
NameCK938449
Unique NameCK938449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938449_ssr47 microsatellite CK938449_ssr47:47..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1895 contig Csv1_Contig1895:1..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK938449 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.437e-25
Identity = 85/240 (35.42%), Postives = 99/240 (41.25%), Query Frame = 2 
Query:  170 EANLHCLEPWTKRKRSKRPHNPPTEEEYLALCLVMLARGTTSTAVLANCNTTTAASQRQKXXXXXXXXXXXXXDQKLLFKCSVCDKAFSSYQALGGHKASHR--KGSGGGDEHXXXXXXXXXXXXXXXGV-----------PNATGRTHECSICHKSFPTGQALGGHKRCHYDGG-----------EKXXXXXXXXXXXXXXXXXRDFDPNLPVLPEL------SPAFFVSGDDEVESPL 799
            E + H L+ W KRKRS+R  +   EEE LALCL+ML+RG           +  A    +                   FKCSVC K+FSSYQALGGHK SHR  + S   D                                AT R H CSIC K FPTGQALGGHKR HYDGG                              R FD N+P +PE               D+EV+SPL
Sbjct:   34 EESGHVLQGWAKRKRSRRQRS---EEENLALCLLMLSRGGKQRVQAPQPESFAAPVPAE-------------------FKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAAASSTELLAAAAAESEVGSTGNGSSAARAFDLNIPAVPEFVWRPCAKGKMMWEDDEEVQSPL 251
The following BLAST results are available for this feature:
BLAST of CK938449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT4.437e-2535.42Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004442_G03 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938449 ID=CK938449; Name=CK938449; organism=Citrus sinensis; type=EST; length=802bp
GGGGACAACTCAAACCTCACACATTCTGAATCTGAAATTAAGCTCCCTCT
CTCTCTCTCTCTCTCGCTCTTTCACACTCACTCTTGGTTTTAGATTCAAA
AGAGTAACGGAGATGGCACTGGAAGCTCTCAACTCTCCAACTACTTCGAC
GCCGCCGTTTCACTTCGAAGAAGCTAATCTTCACTGCCTTGAGCCATGGA
CCAAACGCAAGCGCTCAAAGCGTCCACACAATCCTCCAACTGAAGAAGAG
TATCTCGCGCTCTGCCTCGTCATGCTTGCACGTGGCACAACCTCCACCGC
CGTCTTAGCTAACTGCAACACGACCACCGCCGCCTCACAGCGACAGAAGT
CTCCTGCTCTATCTACTGCTGCAACGACGTCGTCCTCTGACCAGAAGCTT
CTCTTCAAGTGCAGCGTGTGCGACAAGGCGTTTTCTTCTTACCAAGCCTT
GGGTGGTCACAAGGCCAGCCACCGTAAGGGATCTGGGGGCGGCGATGAAC
ACTCCGCATCCACTACCACCAACACCAACGCAACCGCCACGACCACCGGC
GTACCGAACGCCACTGGTAGGACCCACGAGTGTTCCATCTGTCACAAGTC
CTTCCCCACTGGCCAAGCCTTGGGCGGACACAAACGTTGTCACTACGATG
GCGGCGAGAAGAGCGGAGTGACGTCATCCGGATCCAGTAGCACTCACAGC
CAAGTCAGCCACCGTGACTTTGACCCCAACCTCCCTGTCTTACCGGAGCT
CTCCCCTGCTTTCTTCGTCTCCGGTGATGACGAGGTGGAGAGTCCACTGC
CG
back to top