EL492707

Overview
NameEL492707
Unique NameEL492707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length156
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13374 contig Csv1_Contig13374:1290..1445. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.424e-17
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1
Query:    4 VVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VVRRQAVDISPLRRV+QAIYLLTTGARESAFRNIKTIAECLADELI
Sbjct:   83 VVRRQAVDISPLRRVSQAIYLLTTGARESAFRNIKTIAECLADELI 128          
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.428e-17
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 1
Query:    4 VVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VVRRQAVDISPLRRVNQAIYLLTTGARE+AFRNIK+IAECLADELI
Sbjct:  126 VVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELI 171          
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.428e-17
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 1
Query:    4 VVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VVRRQAVDISPLRRVNQAI+LLTTGARE+AFRNIKTIAECLADELI
Sbjct:  136 VVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELI 181          
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.142e-17
Identity = 43/46 (93.48%), Postives = 46/46 (100.00%), Query Frame = 1
Query:    4 VVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VVRRQAVDISPLRRVNQAI+L+TTGARE+AFRNIKTIAECLADELI
Sbjct:  136 VVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELI 181          
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 5.981e-16
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    7 VRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELI
Sbjct:  134 VRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELI 178          
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 82.8037 bits (203), Expect = 5.981e-16
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    7 VRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELI
Sbjct:  134 VRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELI 178          
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 5.981e-16
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    7 VRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELI
Sbjct:  134 VRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELI 178          
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.981e-16
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    7 VRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELI
Sbjct:  158 VRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELI 202          
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.332e-15
Identity = 39/45 (86.67%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    7 VRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRNIKT+AECLADELI
Sbjct:  160 VRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELI 204          
BLAST of EL492707 vs. ExPASy Swiss-Prot
Match: RS5_CAEEL (40S ribosomal protein S5 OS=Caenorhabditis elegans GN=rps-5 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.740e-15
Identity = 39/45 (86.67%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    7 VRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELI 141
            VRRQAVD++PLRRVNQAI+LL TGARE+AFRN+KTIAECLADELI
Sbjct:  140 VRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELI 184          
The following BLAST results are available for this feature:
BLAST of EL492707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RS5_NICPL1.424e-1797.8340S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS5_CICAR2.428e-1795.6540S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS51_ARATH2.428e-1795.6540S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS52_ARATH4.142e-1793.4840S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS5_RAT5.981e-1691.1140S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5_HUMAN5.981e-1691.1140S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN5.981e-1691.1140S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5A_DROME5.981e-1691.1140S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5B_DROME1.332e-1586.6740S ribosomal protein S5b OS=Drosophila melanogast... [more]
RS5_CAEEL1.740e-1586.6740S ribosomal protein S5 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionC5860 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC5860, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492707 ID=EL492707; Name=EL492707; organism=Citrus sinensis; type=EST; length=156bp
CGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCCATTGCGCCGTGTGAA
TCAAGCGATCTATCTACTCACCACTGGTGCTCGTGAATCTGCTTTTCGTA
ACATCAAGACTATTGCCGAATGCTTGGCCGATGAACTCATTACTAGGAAC
TTCATC
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