CX675455

Overview
NameCX675455
Unique NameCX675455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9531 contig Csv1_Contig9531:33..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675455 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 6.692e-59
Identity = 114/171 (66.67%), Postives = 128/171 (74.85%), Query Frame = 2
Query:    2 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPA---TQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIXGLLDLTCQTVADMIKGKTPEEIRKTFNIRNDFTPXXXXXXXXXNQWAFE 505
            MS+ + I LKS DGE+FE++EAVALES TIKHMIEDDC D GIPLPNVT KIL+KV+EYCK+HVE      T                  +EDLK+WD++F+KVDQ TLFDLILAANYLNI GLLDLTCQTVADMIKGKTPEEIRKTFNI+NDFTP         NQWAFE
Sbjct:    1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of CX675455 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.947e-58
Identity = 113/166 (68.07%), Postives = 126/166 (75.90%), Query Frame = 2
Query:    8 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIXGLLDLTCQTVADMIKGKTPEEIRKTFNIRNDFTPXXXXXXXXXNQWAFE 505
            S K IVLKS DGESFEVEEAVALES TI HM+EDDC D G+PLPNVT KILAKV+EYCK+HVE  A++                 ++DLK+WD DF+K+DQATLF+LILAANYLNI  LLDLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:    2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASK-------AEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of CX675455 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.228e-54
Identity = 105/164 (64.02%), Postives = 123/164 (75.00%), Query Frame = 2
Query:   14 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIXGLLDLTCQTVADMIKGKTPEEIRKTFNIRNDFTPXXXXXXXXXNQWAFE 505
            KMI+LKS DGESFE+EEAVA++S TIKHMIEDDCAD GIPLPNVTG ILAKV+EYCKKHVE  A                    ++LK+WD++FVKVDQ TLFDLILAANYLNI GLLDLTC+ VAD ++GKTPE++R  FNI+ND+TP         N+WAFE
Sbjct:    6 KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAE------NDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of CX675455 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.222e-52
Identity = 103/164 (62.80%), Postives = 118/164 (71.95%), Query Frame = 2
Query:   14 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIXGLLDLTCQTVADMIKGKTPEEIRKTFNIRNDFTPXXXXXXXXXNQWAFE 505
            KMI+LKS DGESFEVEEAVA+ES TIKHMIEDDC D GIPLPNVTG ILAKV+EYCKKHVE  A                     +LK+WD DFVKVD  TLFDL+ AANYLNI GLLDLTC+ VAD ++GKTP ++R+ FNI+ND+TP         N+WAFE
Sbjct:    6 KMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAA------EAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of CX675455 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 9.685e-50
Identity = 102/166 (61.45%), Postives = 114/166 (68.67%), Query Frame = 2
Query:    8 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIXGLLDLTCQTVADMIKGKTPEEIRKTFNIRNDFTPXXXXXXXXXNQWAFE 505
            S KMIVL S DG+SFEVEEAVA++S TI HM+EDDC   GIPL NV  KIL KV+EYCKKH    A                   EEDL +WD  F+ ++Q+T+F+LILAANYLNI  LLDLTCQTVADMIKGKTPEEIR TFNI NDFTP         NQWAFE
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKHHVDEANP---------------ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CX675455 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.399e-48
Identity = 101/167 (60.48%), Postives = 113/167 (67.66%), Query Frame = 2
Query:    8 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKK-HVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIXGLLDLTCQTVADMIKGKTPEEIRKTFNIRNDFTPXXXXXXXXXNQWAFE 505
            S KMIVL S DG+SFEVEEAVA++S TI HM+EDDC   GIPL NV  KIL KV+EYCKK HV+                      EEDL  WD  F+ ++Q+T+F+LILAANYLNI  L DLTCQTVADMIKGKTPEEIR TFNI NDFTP         NQWAFE
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHVD----------------EANPISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CX675455 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.147e-43
Identity = 90/166 (54.22%), Postives = 110/166 (66.27%), Query Frame = 2
Query:   14 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKV--DQATLFDLILAANYLNIXGLLDLTCQTVADMIKGKTPEEIRKTFNIRNDFTPXXXXXXXXXNQWAFE 505
            KM++L S DGESF+VEEAVA++S TI HMIEDDC   G+P+ NVTG IL+KV+EYCKKHV   +  +                +++LK WD +F+K     +TLFD++LAANYLNI  LLDL CQTVADMI GK P+EIR    I NDFTP         NQWAFE
Sbjct:    3 KMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVSDSPTE--------------ESKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of CX675455 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.433e-42
Identity = 91/166 (54.82%), Postives = 102/166 (61.45%), Query Frame = 2
Query:    8 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIXGLLDLTCQTVADMIKGKTPEEIRKTFNIRNDFTPXXXXXXXXXNQWAFE 505
            S K I+LKS DG SFEVEE  A +  TI HM EDDC D GIPLP VTGKIL  V+EYC KH  V A                   +EDLK WD +F++  Q+T+FDLI+AANYLNI  LLDL CQTVADMIK  T E  RK FNI ND+T          NQW FE
Sbjct:    2 STKKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKH-HVDAANPCS--------------DEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          
BLAST of CX675455 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.268e-41
Identity = 95/169 (56.21%), Postives = 109/169 (64.50%), Query Frame = 2
Query:    2 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVK-VDQATLFDLILAANYLNIXGLLDLTCQTVADMIKGKTPEEIRKTFNIRNDFTPXXXXXXXXXNQWAFE 505
            MSS K IVL S DGESFEVEEAVA +   ++HMIEDDC    +PL NVTGKIL+ VVEYCKKHV                        ++ K+WD +F+K  DQ T+F L+LAANYLNI GLLDL+ QTVAD IK KTPEEIR+ FNI NDFTP         N WAFE
Sbjct:    1 MSSNK-IVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHV-------------------VDEESDEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
BLAST of CX675455 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.656e-41
Identity = 90/167 (53.89%), Postives = 106/167 (63.47%), Query Frame = 2
Query:    8 SPKMIVLKSCDGESFEVEEAVALE-STTIKHMIEDDCADXGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIXGLLDLTCQTVADMIKGKTPEEIRKTFNIRNDFTPXXXXXXXXXNQWAFE 505
            S K I+LKS DG SFEVEE  A +    I HM E+DC D GIPLPNVTGKILA V+EYC KH  V A                   ++DLK WD +F++ D +T+FDLI AANYLNI  L DL CQTVA++IKG TPE+IR+ FNI ND TP         N+WAFE
Sbjct:    2 STKKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKH-HVDAANPCS--------------DDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          
The following BLAST results are available for this feature:
BLAST of CX675455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SKP1B_ARATH6.692e-5966.67SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH1.947e-5868.07SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH2.228e-5464.02SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH1.222e-5262.80SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH9.685e-5061.45SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH1.399e-4860.48SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK13_ARATH5.147e-4354.22SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK10_ARATH7.433e-4254.82SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]
ASK14_ARATH1.268e-4156.21SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]
ASK9_ARATH1.656e-4153.89SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62D03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62D03-H6-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675455 ID=CX675455; Name=CX675455; organism=Citrus sinensis; type=EST; length=626bp
GATGTCGTCTCCTAAGATGATCGTACTCAAGAGCTGTGACGGCGAGTCGT
TCGAGGTCGAGGAGGCTGTCGCGCTTGAGTCGACGACCATCAAGCACATG
ATCGAGGACGACTGCGCCGATNACGGCATCCCGTTACCGAACGTGACGGG
CAAGATCCTGGCGAAGGTGGTTGAGTATTGCAAGAAACACGTGGAGGTTC
CTGCGACCCAGGATAGCAACAACAGCGGCGCCNACAGCAACGGTACTGCC
ACTAACGGTGGTGAGGAGGATCTCAAAAGCTGGGACACTGACTTCGTCAA
AGTTGACCAGGCCACTCTCTTCGATCTCATCCTGGCAGCAAACTACCTGA
ACATCANGGGGCTGCTGGACCTTACCTGCCAGACTGTTGCTGACATGATC
AAGGGAAAGACTCCGGAGGAGATTCGAAAGACCTTTAACATCAGGAATGA
CTTCACTCCAGAGGAGGAAGAAGAGGTCCGTAGGGAGAACCAGTGGGCTT
TTGAGTGAAAGTTGTTTCAACAAAGACAATTTTTCATTATCATTGTCTTG
CAATCTTGCTGTCTTTAACATGTAGATGTAGTTTTCTAGGGCTTATCTTT
TCCTTTCTCATTGTACTTTCGAACTT
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