CN187556

Overview
NameCN187556
Unique NameCN187556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF2_PETHY (Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.952e-46
Identity = 90/115 (78.26%), Postives = 100/115 (86.96%), Query Frame = -1
Query:  351 AKRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 695
            AKRTYRFI++K+          KLGEP++SYE+FTA LPADECRYAVYDFDF+T EN QKS+I FIAWSPDT++VRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDV RSR
Sbjct:   23 AKRTYRFIIYKIEEKQKEVVVEKLGEPTESYEDFTAGLPADECRYAVYDFDFMTKENHQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFRSR 137          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 8.792e-45
Identity = 86/117 (73.50%), Postives = 101/117 (86.32%), Query Frame = -1
Query:  345 AKRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 695
            AKRTYRFI++K+          K+GEP  +Y++F ASLPA+ECRYA++D+DFVT+ENCQKSKI FIAWSPDTS+VRSKMIYASSKDRFKRELDGIQVELQATDPTE+GLDV+R R N
Sbjct:   23 AKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLPANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIRGRAN 139          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.500e-44
Identity = 87/117 (74.36%), Postives = 100/117 (85.47%), Query Frame = -1
Query:  345 AKRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 695
            AKRT+RFIV+K+          K+GEP++SYE+F ASLP +ECRYAVYDFDFVT ENCQKS+I FIAW PDT++VRSKMIYASSKDRFKRELDGIQVELQA DPTEMGLDV++SR N
Sbjct:   23 AKRTHRFIVYKIEEKQKQVVVEKIGEPTESYEDFAASLPENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQSRAN 139          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.500e-44
Identity = 83/115 (72.17%), Postives = 101/115 (87.83%), Query Frame = -1
Query:  351 AKRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 695
            AKR++RFIVFK+          +LG+P +SY++FTA LPADECRYAV+DFDFVTDENCQKSKI FI+W+PDTS+VRSKM+YASSKDRFKRELDGIQVELQATDP+EM +D+++SR
Sbjct:   23 AKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDFTACLPADECRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKSR 137          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.558e-44
Identity = 88/117 (75.21%), Postives = 98/117 (83.76%), Query Frame = -1
Query:  345 AKRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 695
            AKRT+RFIV+K+          K+GEP  +YE+F ASLPADECRYA+YDFDFVT ENCQKSKI FIAW PD +KVRSKMIYASSKDRFKRELDGIQVELQATDPTEM LDV++SR N
Sbjct:   23 AKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRVN 139          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF2_ARATH (Actin-depolymerizing factor 2 OS=Arabidopsis thaliana GN=ADF2 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.558e-44
Identity = 88/117 (75.21%), Postives = 97/117 (82.91%), Query Frame = -1
Query:  345 AKRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 695
            AKRT+R IV+K+           LGEP  SY++F ASLPAD+CRY +YDFDFVT ENCQKSKI FIAWSPDT+KVR KMIYASSKDRFKRELDGIQVELQATDPTEMGLDV +SRTN
Sbjct:   23 AKRTFRTIVYKIEDKQVIVEK--LGEPEQSYDDFAASLPADDCRYCIYDFDFVTAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFKSRTN 137          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF6_ORYSJ (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 7.443e-44
Identity = 81/115 (70.43%), Postives = 100/115 (86.96%), Query Frame = -1
Query:  351 AKRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSR 695
            +KR++RFI FK+          +LG+P D+Y++FTAS+PA ECRYAV+DFDFVTDENCQKSKI FI+WSPDTSKVRSKM+YASSKDRFKRELDGIQVELQATDP+EM +D++++R
Sbjct:   23 SKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDFTASMPASECRYAVFDFDFVTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKAR 137          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.443e-44
Identity = 84/117 (71.79%), Postives = 96/117 (82.05%), Query Frame = -1
Query:  345 AKRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 695
            AKR YRFIVFK+          KLG P ++YE+FT S+P DECRYAVYD+DF T ENCQKSKI FIAWSPDTS+VRSKM+YASSKDRFKRELDGIQVELQATDP+EM LD+++ R N
Sbjct:   23 AKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGRVN 139          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 9.721e-44
Identity = 82/117 (70.09%), Postives = 99/117 (84.62%), Query Frame = -1
Query:  345 AKRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 695
            AKRTYRFIVFK+          KLG P ++Y++FT+S+P DECRYAVYDFDF T++NCQKSKI FIAWSPDTS+VRSKM+YASSKDRFKRE++GIQVELQATDP+EM LD+++ R N
Sbjct:   23 AKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPDDECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIKGRLN 139          
BLAST of CN187556 vs. ExPASy Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.721e-44
Identity = 87/117 (74.36%), Postives = 95/117 (81.20%), Query Frame = -1
Query:  345 AKRTYRFIVFKMXXXXXXXXXXKLGEPSDSYENFTASLPADECRYAVYDFDFVTDENCQKSKIIFIAWSPDTSKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVMRSRTN 695
            AKRT+RFIV+K+          K+G+P  +YE F A LPADECRYA+YDFDFVT ENCQKSKI FIAW PD +KVRSKMIYASSKDRFKRELDGIQVELQATDPTEM LDV RSR N
Sbjct:   23 AKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139          
The following BLAST results are available for this feature:
BLAST of CN187556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ADF2_PETHY7.952e-4678.26Actin-depolymerizing factor 2 OS=Petunia hybrida G... [more]
ADF7_ORYSJ8.792e-4573.50Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF1_PETHY1.500e-4474.36Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
ADF1_ORYSJ1.500e-4472.17Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]
ADF4_ARATH2.558e-4475.21Actin-depolymerizing factor 4 OS=Arabidopsis thali... [more]
ADF2_ARATH2.558e-4475.21Actin-depolymerizing factor 2 OS=Arabidopsis thali... [more]
ADF6_ORYSJ7.443e-4470.43Actin-depolymerizing factor 6 OS=Oryza sativa subs... [more]
ADF10_ARATH7.443e-4471.79Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]
ADF8_ARATH9.721e-4470.09Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]
ADF1_ARATH9.721e-4474.36Actin-depolymerizing factor 1 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004K10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187556 ID=CN187556; Name=CN187556; organism=Citrus sinensis; type=EST; length=695bp
GTTTTTTTTTTATTTTTTTTTTTTTTTTAACAAATCATGTAACTCGCTTT
ATTACACTGATACTACTGCAAATAACCCAGTTGCAAGCTTTCAAAGCTAA
AATGAGATATGTACCCCCCACAAACCATTATATATTAGTCTGTAATTATC
ATCACACCATATGGGGATACTCACCCTATTAATCCACAGATATAACAAAT
GAGAAGACAACTTAAAAAAGTATTTAACTCCGACCACAAGCTGATAGCAA
AGCAAGTTATAAGTCATAAAAGATATAGACATTACATTTAAGTGAACAAT
ATAGTATGGGCTTTCCATTGCACCATAGGCAAGTCTAAAATTTAATTTGT
GCGGCTTCTCATGACATCAAGACCCATCTCAGTAGGATCAGTAGCCTGCA
ACTCTACCTGAATTCCATCCAATTCTCTCTTGAACCTGTCCTTGGAGCTA
GCATAAATCATCTTGCTTCTCACCTTTGAGGTGTCGGGGGACCATGCAAT
GAAAATAATCTTGCTCTTCTGGCAGTTCTCATCAGTCACAAAGTCAAAAT
CGTAGACAGCGTATCGGCACTCATCCGCTGGGAGGCTAGCAGTGAAATTC
TCATAACTATCAGATGGTTCACCAAGCTTCTCCACAACAACCTGCTTCTG
CTTCTCTTTCATCTTGAAAACTATGAAGCGGTAAGTCCTTTTTGC
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