CN187555
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.140e-27 Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = -3 Query: 384 RLLKRRSQKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 632 R K + K +K +HPPYFQMI EAL+AL +K GSSPYA+AKYME+KHKDELPANFRKIL +QLK+ AAKG LIKI+ASYKL Sbjct: 34 RAPKEKKPKSAKAVTHPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKL 116
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 6.268e-18 Identity = 42/85 (49.41%), Postives = 63/85 (74.12%), Query Frame = -3 Query: 384 AQRLLKRRSQKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 638 A + K + K+ +P+H PY +M++EA+ +L++++GSS YAIAK++E+KHK +LP NFRK+L VQLK A G L K++ SYKL Sbjct: 33 AAKAKKATAPKKRASPTHLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKL 117
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H1_WHEAT (Histone H1 OS=Triticum aestivum PE=2 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17 Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = -3 Query: 384 QKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 611 +K TP+HP Y +M++EA+ AL+++SGSS AI K++E+KHK LPANFRKIL Q+K A G L K++ SYKL Sbjct: 47 KKPRVTPAHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKL 122
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17 Identity = 40/76 (52.63%), Postives = 60/76 (78.95%), Query Frame = -3 Query: 384 QKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 611 +K+S TP+HPPYF+MI +A++ L++++GSS +AI K++EEK K LP+NF+K+L QLK F A L+K++ SYKL Sbjct: 48 RKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQK-SLPSNFKKLLLTQLKKFVASEKLVKVKNSYKL 122
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.633e-16 Identity = 38/87 (43.68%), Postives = 63/87 (72.41%), Query Frame = -3 Query: 384 QEAQRLLKRRSQKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 644 +E ++++ + K T SHP +F+MI++A+ L++++GSS YAI K++E+KHK +LP+NFRK+L LK A G L+K++ S+KL Sbjct: 32 KEKKKVIAAKKPKSKGTSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHK-QLPSNFRKLLLFHLKKLVASGKLVKVKNSFKL 117
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15 Identity = 39/79 (49.37%), Postives = 58/79 (73.42%), Query Frame = -3 Query: 384 RRSQKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 620 +++ K SHP Y +MI +A+++L++K+GSS YAIAK++EEK K +LPANF+K+L LK A G LIK++ S+KL Sbjct: 51 KKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQK-QLPANFKKLLLQNLKKNVASGKLIKVKGSFKL 128
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.465e-14 Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = -3 Query: 384 KQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 608 K+ T SHP Y +MI +A++ L++++GSS YAI K++EEKHK LP FRK+L V LK A L+K++AS+K+ Sbjct: 55 KKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHK-SLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.204e-14 Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = -3 Query: 384 KQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 608 K+ SHP Y +MI +A++ L++++GSS YAI K++EEK K ELP FRK+L + LK A G L+K++AS+KL Sbjct: 55 KKRTVSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-ELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H12_VOLCA (Histone H1-II OS=Volvox carteri GN=H1-II PE=2 SV=3) HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13 Identity = 37/82 (45.12%), Postives = 58/82 (70.73%), Query Frame = -3 Query: 384 KRRSQKQSKT-PSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKH-KDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 623 K ++QK+ KT P+HPPY QM+T+A+++L+++ GSS A+ K++E K+ KD F K L++ LK F G L+K++ SYKL Sbjct: 12 KAKTQKKPKTAPTHPPYIQMVTDAILSLKERDGSSLPALKKFIEAKYGKDIHDKKFPKTLSLALKTFVKNGKLVKVKNSYKL 93
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H11_VOLCA (Histone H1-I OS=Volvox carteri GN=H1-I PE=2 SV=3) HSP 1 Score: 64.6994 bits (156), Expect = 3.803e-11 Identity = 30/79 (37.97%), Postives = 51/79 (64.56%), Query Frame = -3 Query: 384 RSQKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKH-KDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 617 + +K P+HPPY +M+ +A+ L++++GSS A+ K++E K+ KD NF K L+ +K F G L+K++ S+KL Sbjct: 49 KEKKPKAAPTHPPYIEMVKDAITTLKERNGSSLPALKKFIENKYGKDIHDKNFAKTLSQVVKTFVKGGKLVKVKGSFKL 127 HSP 2 Score: 24.2534 bits (51), Expect = 3.803e-11 Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = -2 Query: 604 RSPKALKEKKPKA 642 + PKA KEKKPKA Sbjct: 43 KEPKAPKEKKPKA 55 The following BLAST results are available for this feature:
BLAST of CN187555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN187555 ID=CN187555; Name=CN187555; organism=Citrus sinensis; type=EST; length=655bpback to top |