CN187555

Overview
NameCN187555
Unique NameCN187555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.140e-27
Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = -3
Query:  384 RLLKRRSQKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 632
            R  K +  K +K  +HPPYFQMI EAL+AL +K GSSPYA+AKYME+KHKDELPANFRKIL +QLK+ AAKG LIKI+ASYKL
Sbjct:   34 RAPKEKKPKSAKAVTHPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKL 116          
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.268e-18
Identity = 42/85 (49.41%), Postives = 63/85 (74.12%), Query Frame = -3
Query:  384 AQRLLKRRSQKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 638
            A +  K  + K+  +P+H PY +M++EA+ +L++++GSS YAIAK++E+KHK +LP NFRK+L VQLK   A G L K++ SYKL
Sbjct:   33 AAKAKKATAPKKRASPTHLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKL 117          
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H1_WHEAT (Histone H1 OS=Triticum aestivum PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.396e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = -3
Query:  384 QKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 611
            +K   TP+HP Y +M++EA+ AL+++SGSS  AI K++E+KHK  LPANFRKIL  Q+K   A G L K++ SYKL
Sbjct:   47 KKPRVTPAHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKL 122          
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 40/76 (52.63%), Postives = 60/76 (78.95%), Query Frame = -3
Query:  384 QKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 611
            +K+S TP+HPPYF+MI +A++ L++++GSS +AI K++EEK K  LP+NF+K+L  QLK F A   L+K++ SYKL
Sbjct:   48 RKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQK-SLPSNFKKLLLTQLKKFVASEKLVKVKNSYKL 122          
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.633e-16
Identity = 38/87 (43.68%), Postives = 63/87 (72.41%), Query Frame = -3
Query:  384 QEAQRLLKRRSQKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 644
            +E ++++  +  K   T SHP +F+MI++A+  L++++GSS YAI K++E+KHK +LP+NFRK+L   LK   A G L+K++ S+KL
Sbjct:   32 KEKKKVIAAKKPKSKGTSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHK-QLPSNFRKLLLFHLKKLVASGKLVKVKNSFKL 117          
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 39/79 (49.37%), Postives = 58/79 (73.42%), Query Frame = -3
Query:  384 RRSQKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 620
            +++ K     SHP Y +MI +A+++L++K+GSS YAIAK++EEK K +LPANF+K+L   LK   A G LIK++ S+KL
Sbjct:   51 KKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQK-QLPANFKKLLLQNLKKNVASGKLIKVKGSFKL 128          
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.465e-14
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = -3
Query:  384 KQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 608
            K+  T SHP Y +MI +A++ L++++GSS YAI K++EEKHK  LP  FRK+L V LK   A   L+K++AS+K+
Sbjct:   55 KKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHK-SLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128          
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.204e-14
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = -3
Query:  384 KQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 608
            K+    SHP Y +MI +A++ L++++GSS YAI K++EEK K ELP  FRK+L + LK   A G L+K++AS+KL
Sbjct:   55 KKRTVSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-ELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128          
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H12_VOLCA (Histone H1-II OS=Volvox carteri GN=H1-II PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 37/82 (45.12%), Postives = 58/82 (70.73%), Query Frame = -3
Query:  384 KRRSQKQSKT-PSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKH-KDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 623
            K ++QK+ KT P+HPPY QM+T+A+++L+++ GSS  A+ K++E K+ KD     F K L++ LK F   G L+K++ SYKL
Sbjct:   12 KAKTQKKPKTAPTHPPYIQMVTDAILSLKERDGSSLPALKKFIEAKYGKDIHDKKFPKTLSLALKTFVKNGKLVKVKNSYKL 93          
BLAST of CN187555 vs. ExPASy Swiss-Prot
Match: H11_VOLCA (Histone H1-I OS=Volvox carteri GN=H1-I PE=2 SV=3)

HSP 1 Score: 64.6994 bits (156), Expect = 3.803e-11
Identity = 30/79 (37.97%), Postives = 51/79 (64.56%), Query Frame = -3
Query:  384 RSQKQSKTPSHPPYFQMITEALMALQDKSGSSPYAIAKYMEEKH-KDELPANFRKILAVQLKHFAAKGNLIKIRASYKL 617
            + +K    P+HPPY +M+ +A+  L++++GSS  A+ K++E K+ KD    NF K L+  +K F   G L+K++ S+KL
Sbjct:   49 KEKKPKAAPTHPPYIEMVKDAITTLKERNGSSLPALKKFIENKYGKDIHDKNFAKTLSQVVKTFVKGGKLVKVKGSFKL 127          

HSP 2 Score: 24.2534 bits (51), Expect = 3.803e-11
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = -2
Query:  604 RSPKALKEKKPKA 642
            + PKA KEKKPKA
Sbjct:   43 KEPKAPKEKKPKA 55          
The following BLAST results are available for this feature:
BLAST of CN187555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
H1_SOLPN1.140e-2771.08Histone H1 OS=Solanum pennellii PE=2 SV=1[more]
H1_MAIZE6.268e-1849.41Histone H1 OS=Zea mays PE=2 SV=2[more]
H1_WHEAT1.396e-1753.95Histone H1 OS=Triticum aestivum PE=2 SV=2[more]
H1_SOLLC2.382e-1752.63Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
H1_EUPES2.633e-1643.68Histone H1 OS=Euphorbia esula PE=2 SV=1[more]
H1_PEA6.487e-1549.37Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H12_ARATH2.465e-1449.33Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 ... [more]
H11_ARATH4.204e-1449.33Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 ... [more]
H12_VOLCA7.929e-1345.12Histone H1-II OS=Volvox carteri GN=H1-II PE=2 SV=3[more]
H11_VOLCA3.803e-1137.97Histone H1-I OS=Volvox carteri GN=H1-I PE=2 SV=3[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0004K09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187555 ID=CN187555; Name=CN187555; organism=Citrus sinensis; type=EST; length=655bp
TTTTTTTTTTTTTTAAACCAAACCAAAAGTCGGGAGATCCTCCTTTTCAT
TTATGCAAAACACGATCATACCGGGAGTTGACATGTACATGATACTTCTT
ATCAGACAAGGAAGTTGAAACTAGTTTGTACTTTACTAGTATTATATCAT
ACATATTACTACTGAGCAGTAGCTTTCTTGGCTTTCTTAGCAGCAGAGGA
CTTGATGGATTTGGGCTGCTTTGGTTTGGCAGCAGCCGATTTCTTTGCCT
TCTTAGGCGGAGGAGGAGCGGCGGCGGCAGACTCTGCTTTGATTTTAGCT
GCAGCAGTTACGGACCTTGTTTTCCTTGGGGCCTTGGCCTTGGTCTTGAT
CTCTTTTTTGGTTTTGCCAGCTGCCGCTTCAAAGAGCTTGTAAGAGGCCC
TGATCTTGATGAGATTTCCTTTCGCAGCGAAGTGCTTCAGCTGCACTGCC
AATATTTTCCTGAAATTCGCTGGGAGCTCATCTTTGTGCTTCTCTTCCAT
GTACTTGGCTATTGCGTATGGGCTTGAACCGCTCTTATCTTGCAGCGCCA
TCAGTGCCTCCGTTATCATCTGAAAATAAGGAGGATGAGAGGGGGTTTTG
GACTGCTTTTGGCTTCTTCTCTTTAAGAGCCTTTGGGCTTCTTGTCCTTA
GCAGC
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