CN187554

Overview
NameCN187554
Unique NameCN187554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.989e-53
Identity = 104/160 (65.00%), Postives = 121/160 (75.62%), Query Frame = 3
Query:   54 MSLIPSIFGGRKTNVFDPFSLDVWDPFDGFF--SSALTNVPSTARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 527
            MSLIPSIFGGR++NVFDPFS D+WDPF+GFF  SSAL N  STAR+ + F NAR+DWKETP+AHVFKADLPGL+            +LQISGERSKE EEKNDKWHRVER+SGKF+RRFRLP+NAKME+VKA+MENG                 +I+ISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.927e-51
Identity = 96/158 (60.76%), Postives = 117/158 (74.05%), Query Frame = 3
Query:   54 MSLIPSIFGGRKTNVFDPFSLDVWDPFDGFFSSALTNVPSTARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 527
            MSL+PS FGGR+TNVFDPFSLDVWDPF+GF +  LTN P  A++ + F NA++DW+ETP+AHVFKAD+PGL+          G ILQISGERS E EEK+D WHRVERSSGKF+RRFRLP+NAK+E+VKASMENG                 +++ISG
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 3.286e-51
Identity = 102/159 (64.15%), Postives = 117/159 (73.58%), Query Frame = 3
Query:   54 MSLIPSIFGGRKTNVFDPFSLDVWDPFDGFFS-SALTNVPSTARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 527
            MSLIPSIFGGR+TNVFDPFSLDV+DPF+GF + S L N P  A + + F NA++DW+ETP+AHVFKADLPGLR          G ILQISGERS E EEKNDKWHRVERSSGKF RRFRLP+NAKME++KASMENG                 +I+ISG
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.169e-48
Identity = 95/158 (60.13%), Postives = 113/158 (71.52%), Query Frame = 3
Query:   54 MSLIPSIFGGRKTNVFDPFSLDVWDPFDGFFSSALTNVPSTARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 527
            MS+IPS FGGR++NVFDPFSLDVWDPF  F     ++     +ET+ F N  IDWKETPQAHVFKADLPGL+          G++LQISGER+KE+EEKNDKWHRVERSSGKFLRRFRLP+NAK+++VKA+M NG                 AI+ISG
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDF-PLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.401e-48
Identity = 96/161 (59.63%), Postives = 115/161 (71.43%), Query Frame = 3
Query:   54 MSLIPSIFGGRKTNVFDPFSLDVWDPFDGF-FSSALTNV--PSTARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 527
            MSLIP+ FGGR+ NVFDPFSLDVWDPF  F F + L++   P  +RE S F + R+DWKETP+AHVFKAD+PGL+           ++LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAK+EQVKASMENG                 AIEISG
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.204e-47
Identity = 93/158 (58.86%), Postives = 111/158 (70.25%), Query Frame = 3
Query:   54 MSLIPSIFGGRKTNVFDPFSLDVWDPFDGFFSSALTNVPSTARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 527
            MSLIPS FGGR++NVFDPFSLDVWDPF  F  +      S  RE S F + R+DWKETP+AHVFKADLPG++           R+LQISGERS E+E+KND+WHR+ERSSGKF+RRFRLP+NAKM+QVKA+MENG                  I+ISG
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.879e-47
Identity = 95/158 (60.13%), Postives = 110/158 (69.62%), Query Frame = 3
Query:   54 MSLIPSIFGGRKTNVFDPFSLDVWDPFDGFFSSALTNVPSTARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 527
            MSLIPSIFGGR++NVFDPFSLDVWDPF  F         S + E S F N R+DWKETP+AHVF+AD+PGL+           R+LQISGER+ E+E+KND WHRVERSSG F+RRFRLP+NAK+EQVKASMENG                 AIEISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPT-----SLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.760e-47
Identity = 95/158 (60.13%), Postives = 110/158 (69.62%), Query Frame = 3
Query:   54 MSLIPSIFGGRKTNVFDPFSLDVWDPFDGFFSSALTNVPSTARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 527
            MSLIPS F GR++NVFDPFSLDVWDP   F  S  +   S  RE   F + R+DWKETP+AHVFKADLPGL+           R+LQISGERS E+E+KND+WHRVERSSGKFLRRFRLP+NAKM++VKASMENG                 +IEISG
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.183e-46
Identity = 94/159 (59.12%), Postives = 113/159 (71.07%), Query Frame = 3
Query:   54 MSLIPSIFGGRKTNVFDPFSLDVWDPFDGF-FSSALTNVPSTARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 527
            MSLIPS FGGR+++VFDPFSLDVWDPF  F F S+L+       E S F + R+DWKETP+AHVFKAD+PGL+          GR+LQISGER+ E+E+KND WHRVERSSGK +RRFRLP+NAK++QVKASMENG                 AI+ISG
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLS------AENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CN187554 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.580e-45
Identity = 93/160 (58.13%), Postives = 110/160 (68.75%), Query Frame = 3
Query:   54 MSLIPSIFGGRKTNVFDPFSLDVWDPFDGFFSSALTNVP--STARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKMEQVKASMENGXXXXXXXXXXXXXXXXXAIEISG 527
            MSLIP  FGGR++NVFDPFSLD+WDPF  F      +VP  S + E S F + R+DWKETP+AHVFKAD+PGL+           R+LQISGER+ E+E+KND WHRVERSSGKF RRFRLP+NAK+ +VKASMENG                 AIEISG
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
The following BLAST results are available for this feature:
BLAST of CN187554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HS181_ARATH5.989e-5365.0018.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP17_ARATH1.927e-5160.7617.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17C_ARATH3.286e-5164.1517.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP11_DAUCA1.169e-4860.1317.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP16_SOYBN3.401e-4859.6318.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA2.204e-4758.8618.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP13_SOYBN2.879e-4760.1317.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA3.760e-4760.1318.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_SOYBN3.183e-4659.1217.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP14_SOYBN1.580e-4558.1317.5 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004K08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004K08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187554 ID=CN187554; Name=CN187554; organism=Citrus sinensis; type=EST; length=759bp
AGGAAGATTACTTCAACTCTTGGACATTTTCTTAGCTTCAAAATTTTCCA
ATCATGTCACTCATTCCAAGCATCTTCGGCGGCAGAAAAACCAACGTGTT
CGATCCATTCTCACTAGATGTGTGGGATCCTTTTGACGGGTTCTTCTCCT
CTGCCCTTACCAACGTGCCGTCTACGGCTAGGGAAACATCCCAATTTGCC
AATGCAAGAATTGACTGGAAAGAGACTCCTCAGGCTCATGTATTCAAAGC
TGATCTTCCAGGGCTGAGGAAAGAAGAAGTGAAAGTTGAGGTTGAAGAGG
GCAGGATTCTGCAGATAAGCGGAGAGAGGAGCAAGGAGCAAGAAGAGAAG
AATGACAAGTGGCATCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGAGGAG
GTTCAGGTTGCCCGACAATGCTAAGATGGAGCAGGTTAAGGCCAGCATGG
AGAATGGTGTGCTCACAGTCACTGTTCCTAAAGAGGAGGAGAAGAAACCT
GAAGTTAAGGCCATTGAGATCTCCGGCTAAGTGATAAGTGTAAATGTTTT
CAAGATTGTGTCTATGGTTTGCCGATAAATTTGGTACGAAAGCAAAGCCC
TTGTGTCTGTTCCCCCCCCCCCCCTCCTAATTTGATGTAATAATGTTTGT
GTGTTTGCAAGAGTTTCAAGGGCAAGTCTGAAACTTTGTTAACTAGTTTC
TTAAAAGATAAATTGTGTGCAATAAAATGTATTTTATAGTTTGAAAAAAA
AAAAAAAAA
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