CK938069

Overview
NameCK938069
Unique NameCK938069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK938069_ssr171 microsatellite CK938069_ssr171:171..186. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4913 contig Csv1_Contig4913:34..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK938069 vs. ExPASy Swiss-Prot
Match: PGR5_ARATH (Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana GN=PGR5 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.878e-41
Identity = 91/135 (67.41%), Postives = 109/135 (80.74%), Query Frame = 1 
Query:  214 MAATSVCAAG-----LSSSFHGSWGASFANGGEEYR-MLARSVPNVRVAR----PIRMQPMMGNINEGKGIFAPVVVLTRNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 588
            MAA S+ A G     + +SF+G WG+S +  GE+Y+ ML+++V   + AR     IR  PMM N+NEGKG+FAP+VV+TRN++GKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA
Sbjct:    1 MAAASISAIGCNQTLIGTSFYGGWGSSIS--GEDYQTMLSKTVAPPQQARVSRKAIRAVPMMKNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGERLGFLA 133
The following BLAST results are available for this feature:
BLAST of CK938069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGR5_ARATH4.878e-4167.41Protein PROTON GRADIENT REGULATION 5, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004478_F03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0002_IVF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938069 ID=CK938069; Name=CK938069; organism=Citrus sinensis; type=EST; length=726bp
GCGGGGAACGCTTCAAACTTTTCTCTTCNNNACAGACTTCCATTANNNNN
CCAGAGGCTCTCAATTTTCACAAACAAAATATCCTCTCATTTCATCAGCA
GCACAACCCCAGAAACCACAAACAAGCTAGCAAACCCTCTGAGCCTCCTT
CGCTGAAAGCACAAGCTATTTGTGTGTGTGTGTGTGCGCGCGTGCGTGTT
GAGCGTTTCAATTATGGCTGCTACATCAGTATGTGCAGCTGGGTTATCAT
CTTCGTTTCATGGAAGCTGGGGAGCTTCGTTTGCTAATGGTGGTGAAGAA
TACAGGATGTTGGCAAGATCAGTGCCGAATGTTAGAGTGGCAAGACCCAT
TAGAATGCAACCGATGATGGGGAACATTAATGAAGGCAAAGGCATTTTTG
CTCCTGTTGTTGTTCTCACTCGTAATATCATTGGCAAGAAGAGGTTCAAT
CAGCTTAGAGGCAAAGCTATTGCCTTGCATTCTCAGGTAATTACTGAATT
CTGCAAATCAATAGGAGCTGATGCAAAGCAAAGGCAAGGCCTCATCCGTT
TGGCTAAGAAGAATGGAGAAAGACTTGGCTTCCTTGCATGATAAGAAAAA
CATTTATTGTTTTGTGTTGTTATCACCATGAGATGTTTTAAGTTTATAGT
TTTTTCAAGTGCTTTCTAATGTAAACGTACTTTTCTTCAGCTGGGTGCGT
CCCAGAAATAGAATGTAACCTAAGAT
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