EL492685

Overview
NameEL492685
Unique NameEL492685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length195
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8847 contig Csv1_Contig8847:85..279. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EL492685 vs. ExPASy Swiss-Prot
Match: R35A2_ARATH (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.676e-24
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:   19 SKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVAR 183
            SKSNQYPNTSLIQIEGVNT+EEV WY GKRLAYIYKAKTKKNGSHYRCIWGKV R
Sbjct:   23 SKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTR 77
[Close]
BLAST of EL492685 vs. ExPASy Swiss-Prot
Match: R35A4_ARATH (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.495e-24
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:   19 SKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVAR 183
            SKSNQYPNTSL+QIEGVNT+EEV WY GKRLAYIYKAKTKKNGSHYRCIWGKV R
Sbjct:   23 SKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTR 77
[Close]
BLAST of EL492685 vs. ExPASy Swiss-Prot
Match: R35A3_ARATH (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.961e-24
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:   19 SKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVAR 183
            SKSNQYPNTSL+QIEGVNT+EEV WY GKR+AYIYKAKTKKNGSHYRCIWGKV R
Sbjct:   24 SKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTR 78
[Close]
BLAST of EL492685 vs. ExPASy Swiss-Prot
Match: R35A1_ARATH (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.961e-24
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:   19 SKSNQYPNTSLIQIEGVNTKEEVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVAR 183
            SKSNQYPNTSL+Q+EGVNT EEV+WY GKR+AYIYKAKTKKNGSHYRCIWGKV R
Sbjct:   24 SKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTR 78
The following BLAST results are available for this feature:
BLAST of EL492685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
R35A2_ARATH2.676e-2492.7360S ribosomal protein L35a-2 OS=Arabidopsis thalia... [more]
R35A4_ARATH3.495e-2490.9160S ribosomal protein L35a-4 OS=Arabidopsis thalia... [more]
R35A3_ARATH5.961e-2489.0960S ribosomal protein L35a-3 OS=Arabidopsis thalia... [more]
R35A1_ARATH5.961e-2487.2760S ribosomal protein L35a-1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC5501 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC5501, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492685 ID=EL492685; Name=EL492685; organism=Citrus sinensis; type=EST; length=195bp
GATGAGTCCTGAGTAACATCAAAATCAAACCAGTATCCAAACACATCACT
GATTCAGATCGAGGGAGTGAACACAAAGGAAGAGGTGGCGTGGTACTGCG
GCAAGCGTTTGGCTTACATTTACAAGGCCAAGACTAAGAAGAACGGGAGC
CACTATCGTTGCATTTGGGGAAAAGTTGCCAGATCACTACGCAGT
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