EL492684

Overview
NameEL492684
Unique NameEL492684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492684 vs. ExPASy Swiss-Prot
Match: PGIP_PYRCO (Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.507e-22
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = -3
Query:   14 IPSEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNL 193
            IP+ VGDLPYLETL FHK P+LTGPIQPAIAKLK LK+LR+SWTN+SG VPDF+SQL NL
Sbjct:   86 IPALVGDLPYLETLEFHKQPNLTGPIQPAIAKLKGLKSLRLSWTNLSGSVPDFLSQLKNL 145          
BLAST of EL492684 vs. ExPASy Swiss-Prot
Match: PGIP1_ARATH (Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.766e-21
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = -3
Query:   14 IPSEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNL 193
            IP+EVGDLPYLETL+F KL +LTG IQP IAKLKNL+ LR+SWTN++GP+PDFISQL NL
Sbjct:   86 IPAEVGDLPYLETLVFRKLSNLTGTIQPTIAKLKNLRMLRLSWTNLTGPIPDFISQLKNL 145          
BLAST of EL492684 vs. ExPASy Swiss-Prot
Match: PGIP2_ARATH (Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.838e-19
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = -3
Query:   14 IPSEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNL 193
            IP EVGDLPYL +L+F KL +LTG IQP IAKLKNL  LR+SWTN++GPVP+F+SQL NL
Sbjct:   86 IPPEVGDLPYLTSLIFRKLTNLTGHIQPTIAKLKNLTFLRLSWTNLTGPVPEFLSQLKNL 145          
BLAST of EL492684 vs. ExPASy Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.377e-18
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = -3
Query:   14 IPSEVGDLPYLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNL 193
            IP  VGDLP+LETL+F KL +LTG I PAIAKLK+LK +R+SWTN+SGPVP F S+L NL
Sbjct:   89 IPDAVGDLPFLETLIFRKLSNLTGQIPPAIAKLKHLKMVRLSWTNLSGPVPAFFSELKNL 148          
The following BLAST results are available for this feature:
BLAST of EL492684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PGIP_PYRCO9.507e-2280.00Polygalacturonase inhibitor OS=Pyrus communis GN=P... [more]
PGIP1_ARATH2.766e-2176.67Polygalacturonase inhibitor 1 OS=Arabidopsis thali... [more]
PGIP2_ARATH9.838e-1971.67Polygalacturonase inhibitor 2 OS=Arabidopsis thali... [more]
PGIP_VITVI6.377e-1870.00Polygalacturonase inhibitor OS=Vitis vinifera GN=p... [more]
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Properties
Property NameValue
Genbank descriptionC5492 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC5492, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492684 ID=EL492684; Name=EL492684; organism=Citrus sinensis; type=EST; length=357bp
GATGAGTCCTGAGTAAGTTGGTGAGTTGGCTGATAAAATCAGGAACCGGC
CCAGAAATGTTTGTCCAGCTAATACGTAGCGTCTTCAGGTTTTTGAGCTT
GGCAATGGCGGGTTGTATGGGGCCAGTGAGGCTGGGTAGCTTGTGAAACA
TTAGGGTTTCGAGGTAAGGAAGATCACCAACTTCGGAGGGGATCACTACG
CAGTCACGAGGGGTCACTACGCATCGGATCACTACGCAGTCACGAGGGAT
CACTACGCAGTCACGAGGGATCACTACGCAGTCAGATCACTACGCAGTCG
GATCACTACGCAGTCTACGAGGGATCACTACGCAGTCACGAGGGATCACT
ACGCAGT
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