EL492678

Overview
NameEL492678
Unique NameEL492678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length220
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10773 contig Csv1_Contig10773:154..373. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492678 vs. ExPASy Swiss-Prot
Match: SAP11_ARATH (Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 OS=Arabidopsis thaliana GN=SAP11 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.449e-18
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   97 PKAERHDVTVVICPLCAKGVRLRPDENPHITWENHVTQD 213
            PK +R DVTVVICPLCAKGVRL P+E+P+ITWE HV  D
Sbjct:   48 PKGDREDVTVVICPLCAKGVRLNPNEDPNITWEKHVNTD 86          

HSP 2 Score: 35.4242 bits (80), Expect = 4.449e-18
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3
Query:   51 RVFCLDHRSYNQHQCSKG 104
            +VFCLDHRSY +H C KG
Sbjct:   33 QVFCLDHRSYMKHSCPKG 50          

HSP 3 Score: 25.7942 bits (55), Expect = 4.449e-18
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:   17 DFLPFTCDCC 46
            DFLPFTCD C
Sbjct:   22 DFLPFTCDRC 31          
BLAST of EL492678 vs. ExPASy Swiss-Prot
Match: SAP13_ARATH (Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 OS=Arabidopsis thaliana GN=SAP13 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.498e-18
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   97 PKAERHDVTVVICPLCAKGVRLRPDENPHITWENHVTQD 213
            PK  R DVTVVICPLCAKGVRL PDE+P+ITWE HV  D
Sbjct:   48 PKGNRGDVTVVICPLCAKGVRLNPDEDPNITWEKHVNTD 86          

HSP 2 Score: 34.2686 bits (77), Expect = 7.498e-18
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 3
Query:   51 RVFCLDHRSYNQHQCSKG 104
            +V+CLDHRSY +H C KG
Sbjct:   33 QVYCLDHRSYMKHDCPKG 50          

HSP 3 Score: 25.7942 bits (55), Expect = 7.498e-18
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:   17 DFLPFTCDCC 46
            DFLPFTCD C
Sbjct:   22 DFLPFTCDRC 31          
BLAST of EL492678 vs. ExPASy Swiss-Prot
Match: SAP16_ORYSJ (Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 OS=Oryza sativa subsp. japonica GN=SAP16 PE=2 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 2.190e-15
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   97 PKAERHDVTVVICPLCAKGVRLRPDENPHITWENHVTQD 213
            P A + DVTV+ICPLCAKGVRL P+E+P+ITW+ HV  D
Sbjct:   48 PNANQKDVTVLICPLCAKGVRLNPNEDPNITWDTHVNSD 86          

HSP 2 Score: 31.187 bits (69), Expect = 2.190e-15
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 3
Query:   54 VFCLDHRSYNQHQC 95
            VFCL HRSY  HQC
Sbjct:   34 VFCLQHRSYTSHQC 47          

HSP 3 Score: 25.7942 bits (55), Expect = 2.190e-15
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:   17 DFLPFTCDCC 46
            DFLPFTCD C
Sbjct:   22 DFLPFTCDRC 31          
The following BLAST results are available for this feature:
BLAST of EL492678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SAP11_ARATH4.449e-1874.36Zinc finger AN1 and C2H2 domain-containing stress-... [more]
SAP13_ARATH7.498e-1876.92Zinc finger AN1 and C2H2 domain-containing stress-... [more]
SAP16_ORYSJ2.190e-1566.67Zinc finger AN1 and C2H2 domain-containing stress-... [more]
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Properties
Property NameValue
Genbank descriptionC5434 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC5434, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492678 ID=EL492678; Name=EL492678; organism=Citrus sinensis; type=EST; length=220bp
CGTCGGATCAGCANTCGATTTCTTGCCTTTCACTTGTGATTGCTGCCACA
AGGGTATTTTGTTTGGACCATCGAAGCTACAATCAACACCAATGTTCCAA
AGGCTGAAAGACATGATGTAACCGTTGTTATTTGTCCGCTTTGTGCTAAA
GGTGTTCGTCTGAGACCAGACGAGAATCCACACATCACTTGGGAGAATCA
CGTTACTCAGGACTCATCAC
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