CK937864

Overview
NameCK937864
Unique NameCK937864
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL2_RAT (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.293e-31
Identity = 59/86 (68.60%), Postives = 72/86 (83.72%), Query Frame = 3
Query:    6 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            ++ VIK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL2_MOUSE (Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.293e-31
Identity = 59/86 (68.60%), Postives = 72/86 (83.72%), Query Frame = 3
Query:    6 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            ++ VIK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL2_HUMAN (Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.293e-31
Identity = 59/86 (68.60%), Postives = 72/86 (83.72%), Query Frame = 3
Query:    6 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            ++ VIK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL2_BOVIN (Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.293e-31
Identity = 59/86 (68.60%), Postives = 72/86 (83.72%), Query Frame = 3
Query:    6 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            ++ VIK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL1_ANTCR (Dynein light chain LC6, flagellar outer arm OS=Anthocidaris crassispina PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.214e-30
Identity = 60/86 (69.77%), Postives = 72/86 (83.72%), Query Frame = 3
Query:    6 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            ++ VIK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q AVLLFKSG
Sbjct:    4 RKAVIKNADMPEDMQQDAVDCATQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL1_DROME (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.704e-30
Identity = 58/86 (67.44%), Postives = 72/86 (83.72%), Query Frame = 3
Query:    6 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            ++ VIK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL1_CAEEL (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.704e-30
Identity = 57/86 (66.28%), Postives = 72/86 (83.72%), Query Frame = 3
Query:    6 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            ++ VIK+ADM +D+Q++A+D A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL2_DROME (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.531e-30
Identity = 58/86 (67.44%), Postives = 72/86 (83.72%), Query Frame = 3
Query:    6 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            ++ VIK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL1_CHLRE (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.531e-30
Identity = 58/85 (68.24%), Postives = 70/85 (82.35%), Query Frame = 3
Query:    9 RVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            + VIK+ADM E++Q +AVD A  A EK ++EKD+A  IKK+FD+KH PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    7 KAVIKNADMSEEMQADAVDCATQALEKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 91          
BLAST of CK937864 vs. ExPASy Swiss-Prot
Match: DYL1_RAT (Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.027e-29
Identity = 56/86 (65.12%), Postives = 72/86 (83.72%), Query Frame = 3
Query:    6 KRVVIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 263
            ++ VIK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
The following BLAST results are available for this feature:
BLAST of CK937864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DYL2_RAT9.293e-3168.60Dynein light chain 2, cytoplasmic OS=Rattus norveg... [more]
DYL2_MOUSE9.293e-3168.60Dynein light chain 2, cytoplasmic OS=Mus musculus ... [more]
DYL2_HUMAN9.293e-3168.60Dynein light chain 2, cytoplasmic OS=Homo sapiens ... [more]
DYL2_BOVIN9.293e-3168.60Dynein light chain 2, cytoplasmic OS=Bos taurus GN... [more]
DYL1_ANTCR1.214e-3069.77Dynein light chain LC6, flagellar outer arm OS=Ant... [more]
DYL1_DROME2.704e-3067.44Dynein light chain 1, cytoplasmic OS=Drosophila me... [more]
DYL1_CAEEL2.704e-3066.28Dynein light chain 1, cytoplasmic OS=Caenorhabditi... [more]
DYL2_DROME3.531e-3067.44Dynein light chain 2, cytoplasmic OS=Drosophila me... [more]
DYL1_CHLRE3.531e-3068.24Dynein 8 kDa light chain, flagellar outer arm OS=C... [more]
DYL1_RAT1.027e-2965.12Dynein light chain 1, cytoplasmic OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004481_A05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937864 ID=CK937864; Name=CK937864; organism=Citrus sinensis; type=EST; length=532bp
GGGGAAAACGAGTCGTTATTAAGAGCGCCGACATGAAAGAGGACCTGCAA
AAGGAGGCTGTTGATATTGCTATTGCAGCATTTGAGAAGAACAGTGTAGA
GAAAGATGTAGCTGAGAGGATAAAGAAGGATTTTGATAAGAAGCATGGAC
CTACTTGGCACTGTATTGTCGGTAGCAATTTTGGTTCATATGTGACTCAC
GAAACAAACCACTTTGTTTATTTCTATTTGGATCAGAAAGCAGTTTTGCT
ATTCAAATCCGGTTAGCCCAATGTCGAGAAAGATGGTGGATTGTGGTTCG
GATGATGAGTTTACGTTCCAAATGCTATAAATATTGTCTGTATGTAGTAA
TTGAAATCTTTACATGGAGATTCTTGAGCCTAAGTTGTATATTTGAATTC
GCTTGGAACTGGTTTGATACTTCAAAATGGATGTGCACTGCAGTTTTTAG
TTGAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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