CK937838

Overview
NameCK937838
Unique NameCK937838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4030 contig Csv1_Contig4030:294..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.078e-27
Identity = 61/82 (74.39%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            YSQR+GTGAP                  GNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   51 YSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.078e-27
Identity = 61/82 (74.39%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            YSQR+GTGAP                  GNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   51 YSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.714e-27
Identity = 62/82 (75.61%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+QRVGTGAP                  GNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   48 YAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 129          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.545e-27
Identity = 61/82 (74.39%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+QRVGTGAP                  GNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   50 YAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 131          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.545e-27
Identity = 61/82 (74.39%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+QRVGTGAP                  GNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   50 YAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 131          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.545e-27
Identity = 61/82 (74.39%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+QRVGTGAP                  GNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP+LLPKK+
Sbjct:   47 YAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKN 128          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.630e-27
Identity = 60/82 (73.17%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+QR+GTGAP                  GNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   53 YAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 134          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.630e-27
Identity = 60/82 (73.17%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+QR+GTGAP                  GNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   53 YAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 134          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.898e-27
Identity = 61/82 (74.39%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+QRVG+GAP                  GNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   48 YAQRVGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKA 129          
BLAST of CK937838 vs. ExPASy Swiss-Prot
Match: H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.898e-27
Identity = 60/82 (73.17%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    5 YSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 250
            Y+QRVGTGAP                  GNAARDNKKNRIIPRH+LLAVRNDEELGKLLAGVTIAHGGVLPNINP+LLPKK+
Sbjct:   49 YAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKT 130          
The following BLAST results are available for this feature:
BLAST of CK937838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
H2A4_ORYSJ2.078e-2774.39Probable histone H2A.4 OS=Oryza sativa subsp. japo... [more]
H2A4_ORYSI2.078e-2774.39Probable histone H2A.4 OS=Oryza sativa subsp. indi... [more]
H2A2_MEDTR2.714e-2775.61Probable histone H2A.2 OS=Medicago truncatula GN=M... [more]
H2A6_ORYSJ3.545e-2774.39Probable histone H2A.6 OS=Oryza sativa subsp. japo... [more]
H2A6_ORYSI3.545e-2774.39Probable histone H2A.6 OS=Oryza sativa subsp. indi... [more]
H2A1_MEDTR3.545e-2774.39Probable histone H2A.1 OS=Medicago truncatula GN=M... [more]
H2A5_ORYSJ4.630e-2773.17Probable histone H2A.5 OS=Oryza sativa subsp. japo... [more]
H2A5_ORYSI4.630e-2773.17Probable histone H2A.5 OS=Oryza sativa subsp. indi... [more]
H2A_EUPES7.898e-2774.39Histone H2A OS=Euphorbia esula PE=2 SV=1[more]
H2A3_MEDTR7.898e-2773.17Probable histone H2A.3 OS=Medicago truncatula PE=3... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004481_D02 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937838 ID=CK937838; Name=CK937838; organism=Citrus sinensis; type=EST; length=525bp
GGGCTACTCTCAGCGTGTGGGAACCGGCGCTCCGGTCTATCTTGCTGCTG
TACTTGAGTACCTCGCAGCTGAGGTTCTTGAGTTGGCTGGTAATGCAGCG
AGGGACAACAAGAAGAATAGGATCATCCCAAGGCATGTTTTATTGGCTGT
AAGAAACGATGAGGAGCTTGGGAAGCTTCTTGCTGGTGTGACAATTGCTC
ATGGTGGAGTCTTGCCAAACATCAACCCAGTTCTTCTGCCGAAAAAATCT
GAGAAGGCAGCAACGAAAGAGCCGAAGTCTCCAGCCAAGGCCACTAAGTC
CCCAAAGAAGGCTTAGTTTTTAGTCTTCTCATCTTTAACTGTGTGTATGT
TACTTCTTTGATGTATTCGGCTTGTAGGAAAGCTTCATGCTCGTAGGATT
TAGGGACCATTCTACTGTTTTTAATTGTCCGTCACTGTGTAGAACTTCTT
TTGCTTGGACTGTAGAATGAATGAAATCATGGTACTTGTTCCGAGCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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