CK937822

Overview
NameCK937822
Unique NameCK937822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1521 contig Csv1_Contig1521:3..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK937822 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.160e-23
Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:   58 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYD 384
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYD
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYD 98

HSP 2 Score: 27.335 bits (59), Expect = 5.160e-23
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 3 
Query:  471 LYSGETRSKHH 503
            +YSGETRSKHH
Sbjct:  100 MYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CK937822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN5.160e-2349.54Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004481_D05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937822 ID=CK937822; Name=CK937822; organism=Citrus sinensis; type=EST; length=790bp
GCGGGGGAAGAAGNNNTTAAAGATTTAGAAACTAGCAGCTAAATTGTAAA
TTTAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCTCAGC
CTGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGCA
GTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTC
TCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCGA
CGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCAC
CCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAA
GCCCACACATCCTAACTCTCCCACTGTTTATGACTGCAACCAAATAAAGG
CTAAGAGGAAGGAGGAAAACGTGGCACTCTGTCTCATGGGCGCGTTGAAA
TAGATCTTTGTCTTATTCAGCTTTACAGTGGGGAGACTAGGAGCAAGCAT
CATCACTAGTGGATGATACGCTACAGCGATGTAAATGAATGTGATGGGTC
ACCAACTCACCGGATGAGTTGCCCGTAGTCTGTAGATAGTGTCGTTTCGT
TTTGGATTTCGCAACGTGTCCTTGTCGTATTGTTAATGCTATTTGTATTA
CGTGTCCTTCCTATCTAAAGTTTGGTTTTAAAATGCTGCTGACTAAAAGT
AAATTAAAGACTGTGATGTTTTTATATCATATAATTTAATAATTGTATGT
GATGTGAGGATTGCTAAGCTGTGGGCGGAGATGAAAGGTT
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