EL492674 | Citrus Genome Database

Overview


Name	EL492674
Unique Name	EL492674
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	254

Libraries


Library Name	Type
Citrus sinensis flesh cDNA-AFLP Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig5129	contig	Csv1_Contig5129:226..479.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of EL492674 vs. ExPASy Swiss-Prot
Match: AP1M2_HUMAN (AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2 PE=1 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 6.754e-26
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 1

Query:   91 KKQHLSRKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYE 252
            +K+ +  + PI VKFEIPYFTVSGIQVRY+KIIEKSGYQALPWVRYIT +G+Y+
Sbjct:  366 EKEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEKSGYQALPWVRYITQSGDYQ 419

HSP 2 Score: 46.9802 bits (110), Expect = 6.754e-26
Identity = 18/31 (58.06%), Postives = 24/31 (77.42%), Query Frame = 3

Query:    3 DALVWKIKSFPGNKEYMLRAEFSLPSITAEE 95
            + ++W IKSFPG KEY++RA F LPS+  EE
Sbjct:  339 NVVIWSIKSFPGGKEYLMRAHFGLPSVEKEE 369

[Close]

BLAST of EL492674 vs. ExPASy Swiss-Prot
Match: AP1M2_BOVIN (AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 6.754e-26
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 1

Query:   91 KKQHLSRKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYE 252
            +K+ +  + PI VKFEIPYFTVSGIQVRY+KIIEKSGYQALPWVRYIT +G+Y+
Sbjct:  366 EKEEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEKSGYQALPWVRYITQSGDYQ 419

HSP 2 Score: 46.9802 bits (110), Expect = 6.754e-26
Identity = 18/31 (58.06%), Postives = 24/31 (77.42%), Query Frame = 3

Query:    3 DALVWKIKSFPGNKEYMLRAEFSLPSITAEE 95
            + ++W IKSFPG KEY++RA F LPS+  EE
Sbjct:  339 NTVIWSIKSFPGGKEYLMRAHFGLPSVEKEE 369

[Close]

BLAST of EL492674 vs. ExPASy Swiss-Prot
Match: AP1M2_MOUSE (AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.523e-25
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 1

Query:   97 QHLSRKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYE 252
            + +  + PI VKFEIPYFTVSGIQVRY+KIIEKSGYQALPWVRYIT +G+Y+
Sbjct:  368 EEVEGRPPIGVKFEIPYFTVSGIQVRYMKIIEKSGYQALPWVRYITQSGDYQ 419

HSP 2 Score: 47.3654 bits (111), Expect = 2.523e-25
Identity = 18/31 (58.06%), Postives = 24/31 (77.42%), Query Frame = 3

Query:    3 DALVWKIKSFPGNKEYMLRAEFSLPSITAEE 95
            + ++W IKSFPG KEY++RA F LPS+  EE
Sbjct:  339 NVVIWSIKSFPGGKEYLMRAHFGLPSVETEE 369

[Close]

BLAST of EL492674 vs. ExPASy Swiss-Prot
Match: AP1M1_RAT (AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 2.523e-25
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 1

Query:  112 KAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYE 252
            K PI VKFEIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT  G+Y+
Sbjct:  373 KPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQ 419

HSP 2 Score: 48.1358 bits (113), Expect = 2.523e-25
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 3

Query:    9 LVWKIKSFPGNKEYMLRAEFSLPSITAEE 95
            +VW IKSFPG KEY++RA F LPS+ AE+
Sbjct:  341 IVWSIKSFPGGKEYLMRAHFGLPSVEAED 369

[Close]

BLAST of EL492674 vs. ExPASy Swiss-Prot
Match: AP1M1_HUMAN (AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 2.523e-25
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 1

Query:  112 KAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYE 252
            K PI VKFEIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT  G+Y+
Sbjct:  373 KPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQ 419

HSP 2 Score: 48.1358 bits (113), Expect = 2.523e-25
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 3

Query:    9 LVWKIKSFPGNKEYMLRAEFSLPSITAEE 95
            +VW IKSFPG KEY++RA F LPS+ AE+
Sbjct:  341 IVWSIKSFPGGKEYLMRAHFGLPSVEAED 369

[Close]

BLAST of EL492674 vs. ExPASy Swiss-Prot
Match: AP1M1_BOVIN (AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 2.523e-25
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 1

Query:  112 KAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYE 252
            K PI VKFEIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT  G+Y+
Sbjct:  373 KPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQ 419

HSP 2 Score: 48.1358 bits (113), Expect = 2.523e-25
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 3

Query:    9 LVWKIKSFPGNKEYMLRAEFSLPSITAEE 95
            +VW IKSFPG KEY++RA F LPS+ AE+
Sbjct:  341 IVWSIKSFPGGKEYLMRAHFGLPSVEAED 369

[Close]

BLAST of EL492674 vs. ExPASy Swiss-Prot
Match: AP1M1_MOUSE (AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 3.283e-25
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 1

Query:  112 KAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYE 252
            K PI VKFEIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT  G+Y+
Sbjct:  373 KPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQ 419

HSP 2 Score: 47.7506 bits (112), Expect = 3.283e-25
Identity = 18/29 (62.07%), Postives = 24/29 (82.76%), Query Frame = 3

Query:    9 LVWKIKSFPGNKEYMLRAEFSLPSITAEE 95
            +VW +KSFPG KEY++RA F LPS+ AE+
Sbjct:  341 IVWSVKSFPGGKEYLMRAHFGLPSVEAED 369

[Close]

BLAST of EL492674 vs. ExPASy Swiss-Prot
Match: AP1M_CAEEL (AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.284e-25
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1

Query:  112 KAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYE 252
            + PI+VKFEIPYFT SGIQVRYLKIIEKSGYQALPWVRYIT  GEYE
Sbjct:  372 RPPIKVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGEYE 418

HSP 2 Score: 45.4394 bits (106), Expect = 3.284e-25
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 3

Query:    6 ALVWKIKSFPGNKEYMLRAEFSLPSITAEEA 98
            A VW IK+FPG KEY+L A  SLPS+ +EE+
Sbjct:  339 AFVWTIKNFPGGKEYLLTAHLSLPSVMSEES 369

[Close]

BLAST of EL492674 vs. ExPASy Swiss-Prot
Match: AP1M_DICDI (AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.221e-23
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 1

Query:  112 KAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYE 252
            K PI VKFEIPY+TVSGIQVRYLKIIEKSGYQALPWVRY+ ++G+Y+
Sbjct:  378 KPPIMVKFEIPYYTVSGIQVRYLKIIEKSGYQALPWVRYVCLSGDYQ 424

HSP 2 Score: 41.9726 bits (97), Expect = 2.221e-23
Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 3

Query:    3 DALVWKIKSFP-GNKEYMLRAEFSLPSITAEEAA 101
            DA++W IK FP G +E+++RA F LPSI+ E+ A
Sbjct:  343 DAIIWTIKQFPGGGREFLMRAHFGLPSISDEKPA 376

[Close]

BLAST of EL492674 vs. ExPASy Swiss-Prot
Match: AP1M1_YEAST (AP-1 complex subunit mu-1-I OS=Saccharomyces cerevisiae GN=APM1 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 6.710e-18
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 1

Query:  112 KAPIRVKFEIPYFTVSGIQVRYLKIIE-KSGYQALPWVRYITMAGE 246
            K P+++KF+IPYFT SGIQVRYLKI E K  Y++ PWVRYIT +G+
Sbjct:  423 KGPVQIKFQIPYFTTSGIQVRYLKINEPKLQYKSYPWVRYITQSGD 468

HSP 2 Score: 43.5134 bits (101), Expect = 6.710e-18
Identity = 18/30 (60.00%), Postives = 23/30 (76.67%), Query Frame = 3

Query:    6 ALVWKIKSFPGNKEYMLRAEFSLPSITAEE 95
            A++WKI+SFPG KEY + AE  LPSI+  E
Sbjct:  379 AILWKIRSFPGGKEYSMSAELGLPSISNNE 408

The following BLAST results are available for this feature:

BLAST of EL492674 vs. ExPASy Swiss-Prot

BLAST of EL492674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12


Match Name	E-value	Identity	Description
AP1M2_HUMAN	6.754e-26	74.07	AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2...	[more]
AP1M2_BOVIN	6.754e-26	74.07	AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 P...	[more]
AP1M2_MOUSE	2.523e-25	75.00	AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2...	[more]
AP1M1_RAT	2.523e-25	85.11	AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=...	[more]
AP1M1_HUMAN	2.523e-25	85.11	AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1...	[more]
AP1M1_BOVIN	2.523e-25	85.11	AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 P...	[more]
AP1M1_MOUSE	3.283e-25	85.11	AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1...	[more]
AP1M_CAEEL	3.284e-25	87.23	AP-1 complex subunit mu-1-I OS=Caenorhabditis eleg...	[more]
AP1M_DICDI	2.221e-23	80.85	AP-1 complex subunit mu OS=Dictyostelium discoideu...	[more]
AP1M1_YEAST	6.710e-18	65.22	AP-1 complex subunit mu-1-I OS=Saccharomyces cerev...	[more]

Pages

Properties


Property Name	Value
Genbank description	C5410 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC5410, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EL492674 ID=EL492674; Name=EL492674; organism=Citrus sinensis; type=EST; length=254bp
ATGATGCTTTGGTCTGGAAAATCAAATCTTTCCCNGGTAATAAGGAGTAT
ATGTTGAGGGCAGAGTTTAGTCTTCCTAGTATAACAGCAGAAGAAGCAGC
ACCTGAGTAGAAAGGCTCCAATACGTGTGAAGTTTGAGATACCATATTTT
ACTGTTTCAGGGATTCAGGTTCGTTATTTGAAGATAATTGAAAAAAGTGG
ATACCAGGCTCTTCCATGGGTGAGATACATTACNATGGCTGGTGAATACG
AGTT