EL492670
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EL492670 vs. ExPASy Swiss-Prot
Match: TPPC4_RAT (Trafficking protein particle complex subunit 4 OS=Rattus norvegicus GN=Trappc4 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 3.886e-31 Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 2 Query: 2 TNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 310 +N+ L +AS++HS+ AI QLSP G SGIE+LE DTF LHCFQ+LTG KF V+ +P ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL A++ Sbjct: 105 SNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
BLAST of EL492670 vs. ExPASy Swiss-Prot
Match: TPPC4_MOUSE (Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 3.886e-31 Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 2 Query: 2 TNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 310 +N+ L +AS++HS+ AI QLSP G SGIE+LE DTF LHCFQ+LTG KF V+ +P ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL A++ Sbjct: 105 SNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
BLAST of EL492670 vs. ExPASy Swiss-Prot
Match: TPPC4_BOVIN (Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 3.886e-31 Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 2 Query: 2 TNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 310 +N+ L +AS++HS+ AI QLSP G SGIE+LE DTF LHCFQ+LTG KF V+ +P ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL A++ Sbjct: 105 SNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
BLAST of EL492670 vs. ExPASy Swiss-Prot
Match: TPPC4_PONAB (Trafficking protein particle complex subunit 4 OS=Pongo abelii GN=TRAPPC4 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 8.657e-31 Identity = 60/103 (58.25%), Postives = 80/103 (77.67%), Query Frame = 2 Query: 2 TNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 310 +N+ L +AS++HS+ AI QLSP G SGIE+LE DTF LHC+Q+LTG KF V+ +P ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL A++ Sbjct: 105 SNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
BLAST of EL492670 vs. ExPASy Swiss-Prot
Match: TPPC4_HUMAN (Trafficking protein particle complex subunit 4 OS=Homo sapiens GN=TRAPPC4 PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 8.657e-31 Identity = 60/103 (58.25%), Postives = 80/103 (77.67%), Query Frame = 2 Query: 2 TNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 310 +N+ L +AS++HS+ AI QLSP G SGIE+LE DTF LHC+Q+LTG KF V+ +P ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL A++ Sbjct: 105 SNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
BLAST of EL492670 vs. ExPASy Swiss-Prot
Match: TPPC4_DICDI (Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 8.959e-28 Identity = 56/100 (56.00%), Postives = 75/100 (75.00%), Query Frame = 2 Query: 5 NDSLRVASLWHSMHAISQQLSPTTGCS-GIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQ 301 N +R+ S +HS+HAI+ LSP +G S GIE++E + F L CFQ+ TG KF+V+ +P Q +E LL +YELYTDYVLKNPFYE+EM IRC+LFD L++ Sbjct: 30 NSYIRLGSTFHSLHAIASNLSPVSGSSSGIEVIETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDLFDYKLNR 129
BLAST of EL492670 vs. ExPASy Swiss-Prot
Match: TRS23_SCHPO (Transport protein particle subunit trs23 OS=Schizosaccharomyces pombe GN=trs23 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.284e-23 Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 2 Query: 5 NDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAV 307 N+ L +A H +HAIS Q+SP G SGI+LLEA TF++H Q+ TG KF + E T + L+ YELY+DYVLKNPFY +EMPI+C+LFD L + + Sbjct: 29 NEYLVLAGTIHGVHAISTQISPLPGSSGIQLLEAGTFNMHILQTHTGMKFVLFTEKKTTNARLQLQKFYELYSDYVLKNPFYTLEMPIKCQLFDEQLKRYI 129 The following BLAST results are available for this feature:
BLAST of EL492670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EL492670 ID=EL492670; Name=EL492670; organism=Citrus sinensis; type=EST; length=425bpback to top |