EL492670

Overview
NameEL492670
Unique NameEL492670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6920 contig Csv1_Contig6920:1..425. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492670 vs. ExPASy Swiss-Prot
Match: TPPC4_RAT (Trafficking protein particle complex subunit 4 OS=Rattus norvegicus GN=Trappc4 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.886e-31
Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 2
Query:    2 TNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 310
            +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P    ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:  105 SNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207          
BLAST of EL492670 vs. ExPASy Swiss-Prot
Match: TPPC4_MOUSE (Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.886e-31
Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 2
Query:    2 TNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 310
            +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P    ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:  105 SNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207          
BLAST of EL492670 vs. ExPASy Swiss-Prot
Match: TPPC4_BOVIN (Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.886e-31
Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 2
Query:    2 TNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 310
            +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P    ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:  105 SNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207          
BLAST of EL492670 vs. ExPASy Swiss-Prot
Match: TPPC4_PONAB (Trafficking protein particle complex subunit 4 OS=Pongo abelii GN=TRAPPC4 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.657e-31
Identity = 60/103 (58.25%), Postives = 80/103 (77.67%), Query Frame = 2
Query:    2 TNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 310
            +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHC+Q+LTG KF V+ +P    ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:  105 SNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207          
BLAST of EL492670 vs. ExPASy Swiss-Prot
Match: TPPC4_HUMAN (Trafficking protein particle complex subunit 4 OS=Homo sapiens GN=TRAPPC4 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.657e-31
Identity = 60/103 (58.25%), Postives = 80/103 (77.67%), Query Frame = 2
Query:    2 TNDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAVQ 310
            +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHC+Q+LTG KF V+ +P    ++SLL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct:  105 SNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207          
BLAST of EL492670 vs. ExPASy Swiss-Prot
Match: TPPC4_DICDI (Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.959e-28
Identity = 56/100 (56.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query:    5 NDSLRVASLWHSMHAISQQLSPTTGCS-GIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQ 301
            N  +R+ S +HS+HAI+  LSP +G S GIE++E + F L CFQ+ TG KF+V+ +P  Q +E LL  +YELYTDYVLKNPFYE+EM IRC+LFD  L++
Sbjct:   30 NSYIRLGSTFHSLHAIASNLSPVSGSSSGIEVIETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDLFDYKLNR 129          
BLAST of EL492670 vs. ExPASy Swiss-Prot
Match: TRS23_SCHPO (Transport protein particle subunit trs23 OS=Schizosaccharomyces pombe GN=trs23 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.284e-23
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 2
Query:    5 NDSLRVASLWHSMHAISQQLSPTTGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKVIYELYTDYVLKNPFYEMEMPIRCELFDINLSQAV 307
            N+ L +A   H +HAIS Q+SP  G SGI+LLEA TF++H  Q+ TG KF +  E  T +    L+  YELY+DYVLKNPFY +EMPI+C+LFD  L + +
Sbjct:   29 NEYLVLAGTIHGVHAISTQISPLPGSSGIQLLEAGTFNMHILQTHTGMKFVLFTEKKTTNARLQLQKFYELYSDYVLKNPFYTLEMPIKCQLFDEQLKRYI 129          
The following BLAST results are available for this feature:
BLAST of EL492670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TPPC4_RAT3.886e-3159.22Trafficking protein particle complex subunit 4 OS=... [more]
TPPC4_MOUSE3.886e-3159.22Trafficking protein particle complex subunit 4 OS=... [more]
TPPC4_BOVIN3.886e-3159.22Trafficking protein particle complex subunit 4 OS=... [more]
TPPC4_PONAB8.657e-3158.25Trafficking protein particle complex subunit 4 OS=... [more]
TPPC4_HUMAN8.657e-3158.25Trafficking protein particle complex subunit 4 OS=... [more]
TPPC4_DICDI8.959e-2856.00Trafficking protein particle complex subunit 4 OS=... [more]
TRS23_SCHPO2.284e-2351.49Transport protein particle subunit trs23 OS=Schizo... [more]
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Properties
Property NameValue
Genbank descriptionC5340 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC5340, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492670 ID=EL492670; Name=EL492670; organism=Citrus sinensis; type=EST; length=425bp
TACGAATGACAGCTTGAGAGTGGCGAGTTTATGGCATTCGATGCACGCGA
TCTCTCAACAGTTATCGCCAACCACAGGCTGTTCTGGCATCGAACTCCTT
GAAGCTGACACTTTTGATCTCCATTGCTTCCAATCTCTCACTGGGACAAA
GTTCTTTGTAGTGTGTGAACCTGGGACTCAGCACATGGAATCTCTATTGA
AAGTTATCTATGAGTTGTACACGGATTATGTATTGAAGAATCCCTTTTAT
GAGATGGAGATGCCTATACGATGTGAACTATTTGACATCAATCTGTCACA
GGCAGTACAGAAGGATCGTGTTGCCATGTTGGGGCGATAAACTCCTCTGA
AACATACATCATACTAAATTGTATTTGTTATGCTATCTTGATTTGTTTCT
TTGCATTCGTGCAGTAGAAGGTACG
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