CX675366

Overview
NameCX675366
Unique NameCX675366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675366_ssr101 microsatellite CX675366_ssr101:101..112. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13371 contig Csv1_Contig13371:242..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675366 vs. ExPASy Swiss-Prot
Match: RR17_ARATH (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana GN=RPS17 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.159e-25
Identity = 61/100 (61.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:    5 MQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKAAGESSNAGNNELGIPSESEQ 304
            MQGRVVCA+SDKTVAVEVVRL PHP            QAHDP+NQF+VGD+V+LEKSRPISKTKSF+A+ +  R A K  AG     G+  LG+P ES+Q
Sbjct:   53 MQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAARKAEAG-----GDELLGLPLESQQ 147          
BLAST of CX675366 vs. ExPASy Swiss-Prot
Match: RR17_PEA (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum GN=RPS17 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.577e-22
Identity = 56/101 (55.45%), Postives = 68/101 (67.33%), Query Frame = 2
Query:    5 MQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKAAGESSNAGNNELGIPSESEQQ 307
            M+G+VVCAS +KTVAVEV RL PHP            QAHDPEN F+VGD+VQL K+RPISK K+F+AV  P R + K  AG S      ELGIP +S+Q+
Sbjct:   41 MEGKVVCASGNKTVAVEVTRLAPHPKYQKRIRLKKKYQAHDPENDFKVGDIVQLLKTRPISKKKTFLAVPAPSRKSKK--AGSS-----GELGIPLQSQQE 134          
BLAST of CX675366 vs. ExPASy Swiss-Prot
Match: RR17_ORYSJ (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica GN=RPS17 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.163e-19
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    2 KMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKA 244
            ++ GRVV   +DKTV VEVVRL PHP            QAHDP+NQF+VGD+V+L +SRPISKTK F+AV +PPR+  +K+
Sbjct:   39 QLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELRRSRPISKTKHFLAVPLPPRDTRRKS 119          
BLAST of CX675366 vs. ExPASy Swiss-Prot
Match: RR17_MAIZE (30S ribosomal protein S17, chloroplastic OS=Zea mays GN=RPS17 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.984e-19
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    2 KMQGRVVCASSDKTVAVEVVRLDPHPXXXXXXXXXXXXQAHDPENQFQVGDLVQLEKSRPISKTKSFIAVAMPPRNASKKA 244
            ++ GRVV   +DKTV VEVVRL PHP            QAHDP+NQF+VGD+V+L+ SRPISKTK F+A+ +PPR+  +K+
Sbjct:   34 QLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVELQPSRPISKTKHFLAIPLPPRDTRRKS 114          
The following BLAST results are available for this feature:
BLAST of CX675366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RR17_ARATH3.159e-2561.0030S ribosomal protein S17, chloroplastic OS=Arabid... [more]
RR17_PEA5.577e-2255.4530S ribosomal protein S17, chloroplastic (Fragment... [more]
RR17_ORYSJ1.163e-1955.5630S ribosomal protein S17, chloroplastic OS=Oryza ... [more]
RR17_MAIZE1.984e-1954.3230S ribosomal protein S17, chloroplastic OS=Zea ma... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_61G07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61G07-N13-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675366 ID=CX675366; Name=CX675366; organism=Citrus sinensis; type=EST; length=465bp
AAAAATGCAGGGCAGAGTTGTTTGTGCATCAAGCGACAAGACAGTTGCTG
TTGAAGTTGTGCGTTTAGACCCACATCCAAAGTACAAAAGAAGAATCAGA
AAGAAGAAGAAGTATCAAGCTCATGACCCTGAGAATCAATTCCAAGTTGG
TGACCTTGTTCAGCTTGAAAAGTCCAGGCCCATTAGCAAGACTAAATCTT
TTATTGCTGTGGCCATGCCCCCAAGGAATGCGAGCAAGAAAGCTGCTGGT
GAGAGTAGTAATGCCGGTAATAATGAGCTTGGGATCCCTTCAGAGAGTGA
GCAACAACTGGAGGCTTAGTTCCTTTATTGTTCATTTCCTGTGATTTTGT
AATGCTTTAATACTGGTTAAGATGTTAATTTTTATTTGATGGCTATGAAG
TATAAAATGTGTTTGTTTTAGCTGAAAAAAATAAAAAAAAATGAATGAAA
AAAAAGAAAAAAAAA
back to top