CX675363

Overview
NameCX675363
Unique NameCX675363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675363_ssr135 microsatellite CX675363_ssr135:135..164. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX675363 vs. ExPASy Swiss-Prot
Match: U49A7_ARATH (UPF0497 membrane protein At5g40300 OS=Arabidopsis thaliana GN=At5g40300 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.671e-46
Identity = 91/173 (52.60%), Postives = 119/173 (68.79%), Query Frame = 3
Query:  246 IGSARKILRTNLTILKRAKRDNT----IKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYAL 752
            +  +R+ LR + +      R++     I+K+LLGFRV  FV  LV+FSV+ +D+D+GWA DSFY YKEF +CLA NVI FVYSGF   DL Y L+   R+ R  LR++L+F LDQ+L Y          +RVDDWQSNWG D+FPD+A+ASVALS+++FVA  F SL SGYAL
Sbjct:   92 VSESRRQLRPSFSSSSSTPRESKWASLIRKALLGFRVIAFVSCLVSFSVMVSDRDKGWAHDSFYNYKEFRFCLAANVIGFVYSGFMICDLVYLLSTSIRRSRHNLRHFLEFGLDQMLAYLLASASTSASIRVDDWQSNWGADKFPDLARASVALSYVSFVAFAFCSLASGYAL 264          
BLAST of CX675363 vs. ExPASy Swiss-Prot
Match: U497A_ARATH (UPF0497 membrane protein At2g36330 OS=Arabidopsis thaliana GN=At2g36330 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.373e-43
Identity = 85/161 (52.80%), Postives = 112/161 (69.57%), Query Frame = 3
Query:  285 ILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKS 767
            IL+R++R+  +K S LGFR+   V +L++FS++AADK +GW+ DSF RYKE+ +CL+VNV+ FVYS FQ+ DLAY L          LR   +F +DQ+L Y           RVDDW SNWG+DEF +MA AS+A+SFLAF+A  FSSLISGY L+NQ S
Sbjct:  122 ILRRSRREEVVKFSALGFRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSVNVVAFVYSSFQACDLAYHLVKEKHLISHHLRPLFEFIIDQVLAYLLMSASTAAVTRVDDWVSNWGKDEFTEMASASIAMSFLAFLAFAFSSLISGYNLFNQGS 282          
BLAST of CX675363 vs. ExPASy Swiss-Prot
Match: U49D7_ARATH (UPF0497 membrane protein At5g62820 OS=Arabidopsis thaliana GN=At5g62820 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.013e-34
Identity = 78/198 (39.39%), Postives = 109/198 (55.05%), Query Frame = 3
Query:  174 KQPPPVKPHISSAAAPDTESAPSNIGSARKILRTNLTILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKS 767
            K P  +  H S       ++     G+      +  T + RA+ D+ +  + LGFR+   +  +++FS++AADK +GW+ DS+ RYKE+ YCLAVNVI FVYS F++ D A  +                FS+DQ+L Y           RVDDW SNWG+DEF  MA AS+A+SFLAF A   S+LIS Y L+   S
Sbjct:   99 KSPSSMVVHNSWVREDGGQTTTRKAGAPINGEESTRTTVNRARGDDLVSLTALGFRITEVILCVISFSIMAADKTQGWSGDSYDRYKEYRYCLAVNVIAFVYSAFEACDAACYIAKESYMINCGFHDLFVFSMDQLLAYLLMSASSCAATRVDDWVSNWGKDEFTQMATASIAVSFLAFGAFAVSALISSYRLFTHAS 296          
BLAST of CX675363 vs. ExPASy Swiss-Prot
Match: U497G_MAIZE (UPF0497 membrane protein 16 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.651e-28
Identity = 74/194 (38.14%), Postives = 99/194 (51.03%), Query Frame = 3
Query:  180 PPPVKPHISSAAAPDTESAPSNIGSARKILRTNLTILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ 761
            PPP  P  S A AP      + + SA +++     IL R +R   ++++ L  R       L A +VLAAD  RGWARDS+  Y +F Y  AVNV+ F+YS FQ   LA  +           R   DF++DQ+L Y           R  D   NWG D FP+MA  S+A+SF+AFV     SLIS Y L+ +
Sbjct:  114 PPPPPPAASPAPAPRAPPPHAQVRSADRVVPA---ILSRKRRAAVMQRAALLARAAAAGXXLAALTVLAADTRRGWARDSYSNYAQFRYSEAVNVVGFLYSVFQFVALAELMRRNTHLIPHPKRGLFDFTMDQVLAYLLISSSSSATARASDLTENWGSDSFPNMANGSIAISFVAFVVFAICSLISAYNLFRR 304          
BLAST of CX675363 vs. ExPASy Swiss-Prot
Match: U497F_MAIZE (UPF0497 membrane protein 15 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.935e-27
Identity = 71/193 (36.79%), Postives = 97/193 (50.26%), Query Frame = 3
Query:  183 PPVKPHISSAAAPDTESAPSNIGSARKILRTNLTILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ 761
            PP  P  S A AP      + + SA +++     IL R +R   ++++ L  R       L A +VLA+D  RGWARDS+  Y +F Y  AVNV+ F+YS FQ   LA  +           R   DF++DQ++ Y           R  D   NWG D FP MA  S+A+SF+AFV     SLIS Y L+ +
Sbjct:  111 PPPPPAASPAPAPRAPPPHAQVRSADRVVPA---ILSRKRRAAVMQRAALLARAAAAGLCLAALAVLASDTRRGWARDSYSNYAQFRYSEAVNVVGFLYSVFQFVALAELMRRNKHLIPHPKRDLFDFTMDQVVAYLLISSSSSATARASDLIENWGSDSFPSMANGSIAISFVAFVVFAICSLISAYNLFRR 300          
BLAST of CX675363 vs. ExPASy Swiss-Prot
Match: U497R_ORYSJ (UPF0497 membrane protein Os02g0134500 OS=Oryza sativa subsp. japonica GN=Os02g0134500 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.871e-26
Identity = 77/203 (37.93%), Postives = 104/203 (51.23%), Query Frame = 3
Query:  180 PPPVKPHIS-----SAAAPDTESAPSNIGSARKILRTNLT---ILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAG-HRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ 761
            PPP  P         A AP    AP+    AR +   +     IL R +    ++++ L  RV   +  L A +VLAAD  +G+A DS+  Y +  Y  AVNVI FVYS  Q F LA  +    H  PR+   Y+ DF +DQ+L Y           RV DW  NWG D FP MA +S+A+SF+AF+    S+LIS Y L+ +
Sbjct:  105 PPPPAPAAPVLVPPPAPAPRPAPAPAPRVPARAVEHDHRVVPDILLRKRPTAVLQRTALVARVAAALLCLAALAVLAADSRKGFALDSYSNYSQLRYSEAVNVIGFVYSVLQFFVLADLMRRNKHLNPRRKGDYF-DFFMDQVLAYLLISSSSSATARVGDWIDNWGSDPFPKMANSSIAISFMAFLVFAISALISAYNLFRR 306          
BLAST of CX675363 vs. ExPASy Swiss-Prot
Match: U4975_SORBI (UPF0497 membrane protein Sb04g002820 OS=Sorghum bicolor GN=Sb04g002820 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.001e-25
Identity = 77/208 (37.02%), Postives = 98/208 (47.12%), Query Frame = 3
Query:  180 PPPVKPHIS---------SAAAPDTESAPSNIGSA-----RKILRTNLTILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ 761
            PPPV P            SA AP     P+   S+     R   +    IL R +R   ++++ L  R       L A +VLAAD  +GWARDS+  Y +F Y  AVNVI F+YS FQ   L   +           R   DF++DQ+LTY           RV D   NWG D FP MA  S+A+SFLAF      SLIS Y L+ +
Sbjct:  243 PPPVPPSPPAPAQAPVPPSATAPAPAPVPAPRASSPHVQFRSADQVVPNILSRKRRAAAMQRTALLARGAAAGLCLAALAVLAADTRKGWARDSYSNYTQFRYSEAVNVIGFIYSVFQFVALVELMRRNKHLIPHPKRDLFDFTMDQVLTYLLISSSSSATARVSDLIDNWGSDPFPSMANGSIAISFLAFAVFAICSLISAYNLFRR 450          
BLAST of CX675363 vs. ExPASy Swiss-Prot
Match: U497H_MAIZE (UPF0497 membrane protein 17 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.311e-17
Identity = 53/147 (36.05%), Postives = 77/147 (52.38%), Query Frame = 3
Query:  318 KKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYN 758
            ++ LL  R+   V SL AFSV+A+ +  GWA D + R+ ++ Y +AVNVIVF YS  QS      L +     R +  YY    LDQ+L Y           R D W S +G D F      ++ LSF+AF+ L  +++IS   L++
Sbjct:  221 RELLLALRLATAVLSLAAFSVIASARTSGWAGDYYARHLQYRYAVAVNVIVFAYSVAQSLGKIRHLVSPRFTFRTMSSYYCSLFLDQVLAYLLMSASSAAASRNDLWVSRFGTDAFVRKITGALWLSFVAFLVLALNAVISXANLFS 367          
BLAST of CX675363 vs. ExPASy Swiss-Prot
Match: U4974_SORBI (UPF0497 membrane protein Sb03g029220 OS=Sorghum bicolor GN=Sb03g029220 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.110e-16
Identity = 61/197 (30.96%), Postives = 96/197 (48.73%), Query Frame = 3
Query:  168 KHKQPPPVKPHISSAAAPDTESAPSNIGSARKILRTNLTILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDRGWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYN 758
            +H+     + H ++AA  +  S P ++ +A       + + +R +   T+       R+   V SL AFSV+A+ +  GWA D +  + ++ Y +AVNVIV  YS  QSF    RL +     R +  YY    LDQ L Y           R D W S +G D F     +++ LSF+AF+ L  ++LIS   L++
Sbjct:  277 QHQHQQRQEQHAAAAAVENGGSVPPDVAAA-------VAVGERRELSVTL-------RLATAVLSLAAFSVIASARTSGWAGDYYAHHLQYRYAVAVNVIVCAYSIAQSFGEIRRLISPRFIFRSMSSYYCSLFLDQALAYLLMSASSAAASRNDLWVSRFGTDAFNRKITSALWLSFIAFLMLALNALISTANLFS 459          
BLAST of CX675363 vs. ExPASy Swiss-Prot
Match: N24_MEDTR (UPF0497 membrane protein N24 OS=Medicago truncatula GN=N24 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.508e-16
Identity = 64/193 (33.16%), Postives = 86/193 (44.56%), Query Frame = 3
Query:  237 PSNIGSARKILRTNLTILKRAKRDNTIKKSLLGFRVCGFVFSLVAFSVLAADKDR--------GWARDSF----------YRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNW---GEDEFPDMAKASVALSFLAFVALGFSSLISGYAL 752
            P N     +++ TN     ++K++     +LL  RV  FVF L+AFSVL A + R         W    F          Y++ EF Y  A NVI FVYSG Q   L   L          L+ Y + ++DQ L Y                +  W   G D F +MA ASV++SFLAF A   +SL+SG  L
Sbjct:   41 PKNTSGDTEVVITNFL---KSKKEVKWYVALLVIRVFAFVFCLIAFSVLGASEQRVLVSENLTNWYSSGFTIQTPYEFHWYKWDEFRYSFAANVIGFVYSGLQICHLVMYLITKKHTINPKLQGYFNVAIDQTLAYILMSASSSAATAAHLLKDYWLEHGADTFIEMANASVSMSFLAFGAFALASLVSGIIL 230          
The following BLAST results are available for this feature:
BLAST of CX675363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
U49A7_ARATH6.671e-4652.60UPF0497 membrane protein At5g40300 OS=Arabidopsis ... [more]
U497A_ARATH2.373e-4352.80UPF0497 membrane protein At2g36330 OS=Arabidopsis ... [more]
U49D7_ARATH2.013e-3439.39UPF0497 membrane protein At5g62820 OS=Arabidopsis ... [more]
U497G_MAIZE1.651e-2838.14UPF0497 membrane protein 16 OS=Zea mays PE=2 SV=2[more]
U497F_MAIZE6.935e-2736.79UPF0497 membrane protein 15 OS=Zea mays PE=2 SV=1[more]
U497R_ORYSJ5.871e-2637.93UPF0497 membrane protein Os02g0134500 OS=Oryza sat... [more]
U4975_SORBI1.001e-2537.02UPF0497 membrane protein Sb04g002820 OS=Sorghum bi... [more]
U497H_MAIZE1.311e-1736.05UPF0497 membrane protein 17 OS=Zea mays PE=2 SV=1[more]
U4974_SORBI1.110e-1630.96UPF0497 membrane protein Sb03g029220 OS=Sorghum bi... [more]
N24_MEDTR5.508e-1633.16UPF0497 membrane protein N24 OS=Medicago truncatul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_61G05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61G05-N9-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675363 ID=CX675363; Name=CX675363; organism=Citrus sinensis; type=EST; length=864bp
CACCGGAAACGCTCTCTCCACTATCCGAACCAGAGTTGGAACAGCACACA
ACCCACAACCCACCGCTGGGACAAGAACATCTCCACCACTACAACTCCAC
GCCCGAATCACCGGCGTTGGATTTCTCACATCACGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAGAAACACAAACAACCACCTCCAGTTAAGCCTCAT
ATATCTTCGGCTGCAGCGCCGGATACAGAAAGTGCTCCTAGTAATATCGG
GAGTGCAAGGAAAATTTTGAGGACCAACTTGACCATCCTGAAGAGAGCCA
AGAGGGACAACACGATCAAAAAGTCACTGCTCGGGTTTAGGGTTTGTGGG
TTTGTGTTTAGCTTGGTTGCTTTCTCAGTTTTGGCCGCTGATAAAGACAG
GGGATGGGCTCGCGATTCTTTCTATCGTTACAAAGAGTTCAGCTACTGTT
TGGCAGTGAATGTGATCGTTTTTGTGTATTCTGGGTTTCAATCATTTGAT
TTAGCCTATCGATTGACTGCCGGACATCGCAAACCACGGCAGATTCTCCG
GTATTACTTGGATTTTTCATTGGACCAGATATTGACTTATCTTCTTCTAT
CTGCATCGTCTTCGGCTGCTGTCCGGGTAGATGATTGGCAATCCAACTGG
GGCGAAGACGAGTTCCCAGATATGGCGAAGGCATCCGTGGCATTGTCTTT
CCTTGCATTTGTTGCATTAGGCTTCAGCTCACTCATATCTGGTTATGCCC
TTTATAATCAGAAATCAAGGTAGTCATACTGTTGCCTGGATCACATACAT
TACACACATACATATTACACGTGACACGGTCTTGATTGTCGAGGGCATAT
TAATGCAAAAGCTT
back to top