CK937722

Overview
NameCK937722
Unique NameCK937722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6698 contig Csv1_Contig6698:227..848. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_CITSI (Cytochrome c biogenesis protein ccsA OS=Citrus sinensis GN=ccsA PE=3 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 5.554e-90
Identity = 171/196 (87.24%), Postives = 171/196 (87.24%), Query Frame = -1
Query:    5 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNDYRY 592
            VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYE           IHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGY             LVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARN YRY
Sbjct:   17 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYESLIFLSWSLSIIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYAALLCGSLLSTALLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNSLSARNYYRY 212          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_EUCGG (Cytochrome c biogenesis protein ccsA OS=Eucalyptus globulus subsp. globulus GN=ccsA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.130e-57
Identity = 119/197 (60.41%), Postives = 140/197 (71.07%), Query Frame = -1
Query:    8 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNDYR 592
            ++SI ITI+LI+  VDEI GLY SSE+GMTAT FC+TGLL+TRW+YS HFPLSDLYE           IH +  FK ++N+LS ITAPS  FTQGFATSG LT+MHQS I+VPALQ QWLMMHVSMM+LGY             LVIT RK IR+F K+ NF  +N SF F EIQYMNE+ NV L +   S+RN YR
Sbjct:   17 IISIVITIFLISLSVDEIVGLYDSSEKGMTATFFCITGLLVTRWIYSGHFPLSDLYESLIFLSWSFSVIHMVPYFKKHKNYLSTITAPSTIFTQGFATSGLLTEMHQSEIVVPALQSQWLMMHVSMMILGYAALLCGSLLSVALLVITLRKAIRVFSKKNNF--LNESFSFVEIQYMNERSNVLLTTSFCSSRNYYR 211          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_VITVI (Cytochrome c biogenesis protein ccsA OS=Vitis vinifera GN=ccsA PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.076e-56
Identity = 122/197 (61.93%), Postives = 138/197 (70.05%), Query Frame = -1
Query:    8 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNDYR 592
            VVSI ITI+LIT LVDEI GL  SSE+GM AT FC+TGLL+TRW+Y  HFPLSDLYE           IH +  FK ++NHLSA+TAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMMVLGY             LVITFR+ IR+  K  +F  +N SF F EIQYMN+  NV  N+  LS RN YR
Sbjct:   17 VVSIVITIHLITLLVDEIVGLSDSSEKGMIATFFCITGLLVTRWIYLGHFPLSDLYESLIFLSWSFSIIHIVPYFKKHKNHLSALTAPSAIFTQGFATSGLLTEMHQSEILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRQDIRILCKNNHF--LNKSFSFDEIQYMNKGNNVLQNTSFLSVRNYYR 211          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_MANES (Cytochrome c biogenesis protein ccsA OS=Manihot esculenta GN=ccsA PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.169e-55
Identity = 120/198 (60.61%), Postives = 136/198 (68.69%), Query Frame = -1
Query:    5 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLN--SLSARNDYRY 592
            VVSI ITI+LIT L DE   LY SSE+GM  T FC+TGLL+TRW++  H PLSDLYE           IH +  FK ++N LSAITAPS FFTQGFATSG LT MHQS ILVPALQ QWLMMHVSMM+LGY             LVITFRK+IR+F K  N   +N SF FSEIQYM E+KNV  N   LS+RN YR+
Sbjct:   17 VVSIVITIHLITLLADEFVELYDSSEKGMITTFFCITGLLVTRWIFLGHLPLSDLYESLIFLSWSFSIIHMVPYFKKHKNFLSAITAPSTFFTQGFATSGLLTDMHQSEILVPALQSQWLMMHVSMMILGYAALLCGSLFSVAFLVITFRKIIRIFDKSNNL--LNNSFFFSEIQYMAERKNVLRNISFLSSRNYYRF 212          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_CARPA (Cytochrome c biogenesis protein ccsA OS=Carica papaya GN=ccsA PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 5.801e-55
Identity = 120/199 (60.30%), Postives = 138/199 (69.35%), Query Frame = -1
Query:    5 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDF-KNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNDYRY 592
            VVSI ITIY +T LVDEI GLY SS++GM  T FC+TGLL  RW+YS HFPLS+LYE           IH +  F K ++N+L+AIT PSA  TQGFATSG L KM QS ILVPALQ QWLMMHVSMMVLGY             LVITFRKVIR+F K  NF  +N SF F +IQYMNE+ N+ LN+  LS+RN YRY
Sbjct:   17 VVSIVITIYFLTLLVDEIVGLYDSSDKGMIVTFFCITGLLAARWIYSGHFPLSNLYESLIFLSWSFSIIHMVCYFNKKHKNNLNAITGPSAILTQGFATSGLLNKMSQSVILVPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKVIRIFGKSNNF--LNESFSFGKIQYMNERSNILLNTSFLSSRNYYRY 213          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_GOSHI (Cytochrome c biogenesis protein ccsA OS=Gossypium hirsutum GN=ccsA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.576e-55
Identity = 120/202 (59.41%), Postives = 138/202 (68.32%), Query Frame = -1
Query:    5 VVSIGITIYLITF--LVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKI--FDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNDYRY 592
            VVSI ITI+ +T   LVDE+ GLY SSE+GM  T FC+TGLL+TRW+YS HFPLSDLYE           IH +    FK  +N+LSAITAPSA FTQGFATSG LTKMHQS IL PALQ QWLMMHVSMMVLGY             LVITFRK I++  +  NF     SF F +IQYMNE+ NV LN+  LS++N YRY
Sbjct:   17 VVSIVITIHFLTLFLLVDEVVGLYDSSEKGMIVTFFCITGLLVTRWIYSGHFPLSDLYESLIFLSWGFSLIHMVSYLKFKKRKNNLSAITAPSAIFTQGFATSGLLTKMHQSAILAPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKAIKIIGENNNF-----SFSFGKIQYMNERSNVLLNTYFLSSKNYYRY 213          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_PLAOC (Cytochrome c biogenesis protein ccsA OS=Platanus occidentalis GN=ccsA PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 9.895e-55
Identity = 118/198 (59.60%), Postives = 138/198 (69.70%), Query Frame = -1
Query:    5 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNDYRY 592
            +VSI ITI+L+T LVD I GLY SSE+GM AT  C+TG L+TRW+YSRHFPLSDLYE           IH +   +N++NHLSAITAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMMVL Y             LVI FRK I +F K  N++ + GSF F E QY+NE+ N+  N+  LS RN YRY
Sbjct:   17 IVSIVITIHLMTLLVDGIVGLYDSSEKGMIATFLCITGFLVTRWIYSRHFPLSDLYESLIFLSWSFSIIHMVPKIRNHKNHLSAITAPSAIFTQGFATSGLLTEMHQSAILVPALQSQWLMMHVSMMVLSYAALLCGSLLSIALLVIRFRKNIEIFGK-DNYLLI-GSFSFGESQYVNERSNILRNTSFLSFRNYYRY 212          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_GOSBA (Cytochrome c biogenesis protein ccsA OS=Gossypium barbadense GN=ccsA PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.879e-54
Identity = 119/202 (58.91%), Postives = 137/202 (67.82%), Query Frame = -1
Query:    5 VVSIGITIYLITF--LVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKI--FDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNDYRY 592
            VVSI ITI+ +T   LVDE+ GLY SSE+GM  T FC+TGLL+TRW+YS HFPLSDLYE           IH +    FK  +N+LSAITAP A FTQGFATSG LTKMHQS IL PALQ QWLMMHVSMMVLGY             LVITFRK I++  +  NF     SF F +IQYMNE+ NV LN+  LS++N YRY
Sbjct:   17 VVSIVITIHFLTLFLLVDEVVGLYDSSEKGMIVTFFCITGLLVTRWIYSGHFPLSDLYESLIFLSWGFSLIHMVSYLKFKKRKNNLSAITAPRAIFTQGFATSGLLTKMHQSAILAPALQSQWLMMHVSMMVLGYAALLCGSLLSVALLVITFRKAIKIIGENNNF-----SFSFGKIQYMNERSNVLLNTYFLSSKNYYRY 213          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_MORIN (Cytochrome c biogenesis protein ccsA OS=Morus indica GN=ccsA PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 6.414e-54
Identity = 118/198 (59.60%), Postives = 135/198 (68.18%), Query Frame = -1
Query:    5 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLNS--LSARNDYRY 592
            VVSI ITI+LIT LVDEI GLY S E+GM  T FC+TGLL+TRW+Y R+ PLS+LYE           IH +  FK  +N+L AITAPSA FTQGFATSG LT+MHQS ILVPALQ  WLMMHVSMMVLGY             LVITFRK I +F K  NF  VN SF   EIQY+ EK N+  N+  LS+RN YR+
Sbjct:   17 VVSIVITIHLITLLVDEIIGLYDSLEKGMMTTFFCITGLLMTRWIYLRYLPLSNLYESLIFLSWSFSIIHMVPYFKKYKNYLKAITAPSAIFTQGFATSGLLTEMHQSEILVPALQSHWLMMHVSMMVLGYAALLCGSLLSLALLVITFRKFISIFSKSNNF--VNESFSLGEIQYVREKNNLLPNTSFLSSRNYYRF 212          
BLAST of CK937722 vs. ExPASy Swiss-Prot
Match: CCSA_BUXMI (Cytochrome c biogenesis protein ccsA OS=Buxus microphylla GN=ccsA PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 6.414e-54
Identity = 119/198 (60.10%), Postives = 135/198 (68.18%), Query Frame = -1
Query:    5 VVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWVYSRHFPLSDLYEXXXXXXXXXXXIHKIFDFKNNQNHLSAITAPSAFFTQGFATSGFLTKMHQSRILVPALQVQWLMMHVSMMVLGYXXXXXXXXXXXXXLVITFRKVIRLFLKRKNFVHVNGSFCFSEIQYMNEKKNVFLN--SLSARNDYRY 592
            +VSI ITI+LIT LVDEI GLY S E+GM +T  C+TGLL+TRW+YS H PLS+LYE           IH I  FKN++NHLS +TAPSA FTQGFATSG LT+MHQS ILVPALQ QWLMMHVSMMVL Y             LVITFRK I +F KR +   + GSF F EIQY NE+ NV  N   LS RN  RY
Sbjct:   17 IVSIVITIHLITLLVDEIVGLYDSLEKGMISTFLCITGLLVTRWIYSGHLPLSNLYESLIFLSWSFSIIHMIPYFKNHKNHLSLVTAPSAIFTQGFATSGLLTEMHQSAILVPALQSQWLMMHVSMMVLSYGALLCGSLLSVALLVITFRKNIDIFGKRNHL--LIGSFSFGEIQYTNERSNVLRNVSFLSLRNYRRY 212          
The following BLAST results are available for this feature:
BLAST of CK937722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
CCSA_CITSI5.554e-9087.24Cytochrome c biogenesis protein ccsA OS=Citrus sin... [more]
CCSA_EUCGG2.130e-5760.41Cytochrome c biogenesis protein ccsA OS=Eucalyptus... [more]
CCSA_VITVI3.076e-5661.93Cytochrome c biogenesis protein ccsA OS=Vitis vini... [more]
CCSA_MANES1.169e-5560.61Cytochrome c biogenesis protein ccsA OS=Manihot es... [more]
CCSA_CARPA5.801e-5560.30Cytochrome c biogenesis protein ccsA OS=Carica pap... [more]
CCSA_GOSHI7.576e-5559.41Cytochrome c biogenesis protein ccsA OS=Gossypium ... [more]
CCSA_PLAOC9.895e-5559.60Cytochrome c biogenesis protein ccsA OS=Platanus o... [more]
CCSA_GOSBA2.879e-5458.91Cytochrome c biogenesis protein ccsA OS=Gossypium ... [more]
CCSA_MORIN6.414e-5459.60Cytochrome c biogenesis protein ccsA OS=Morus indi... [more]
CCSA_BUXMI6.414e-5460.10Cytochrome c biogenesis protein ccsA OS=Buxus micr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004482_G08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937722 ID=CK937722; Name=CK937722; organism=Citrus sinensis; type=EST; length=622bp
GGGGATACCTGTAATCATTTCTAGCGGAAAGACTATTTAGAAAAACATTC
TTTTTTTCGTTCATGTATTGGATTTCACTGAAACAAAATGACCCATTTAC
ATGTACAAAATTTTTTCTTTTCAAAAAAAGCCTTATCACTTTTCGAAATG
TAATGACTAGAAGAGCCGTGGATAATAATGATCCACATAAAAGAGCTGCA
TAGCCCAATACCATCATACTTACGTGCATCATTAACCACTGGACTTGGAG
AGCGGGTACTAATATTCTGGATTGATGCATTTTGGTTAAAAAACCCGAAG
TCGCAAAGCCTTGGGTAAAAAAAGCACTTGGTGCCGTTATAGCGCTTAAA
TGATTTTGATTATTTTTAAAATCAAAAATCTTATGAATAATAGATAAACT
CCATGAAAGAAAGATTAATGATTCATATAAATCACTTAATGGGAAATGTC
TCGAGTAAACCCAACGGGTGATTAATAATCCTGTTAGACAGAAAGCGGTA
GCTGTCATCCCCCTTTCTGATGAAGCATATAGCCCTCTGATTTCATCGAC
TAAGAAGGTTATTAAATAAATTGTAATTCCAATTGAAACGACCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
back to top