EL492666

Overview
NameEL492666
Unique NameEL492666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length183
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13205 contig Csv1_Contig13205:738..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EL492666 vs. ExPASy Swiss-Prot
Match: ODPA_PEA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.877e-14
Identity = 40/54 (74.07%), Postives = 42/54 (77.78%), Query Frame = 3 
Query:    9 CEHNHYGNGDS*VXSRKVVPHTTSRGDYVPGLKVDGMDALAVKQACKFAKEHAL 170
            CE+NHYG G +   S K  P    RGDYVPGLKVDGMDALAVKQACKFAKEHAL
Sbjct:  230 CENNHYGMGTATWRSAKS-PAYFKRGDYVPGLKVDGMDALAVKQACKFAKEHAL 282
[Close]
BLAST of EL492666 vs. ExPASy Swiss-Prot
Match: ODPA2_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=IAR4 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.877e-14
Identity = 40/54 (74.07%), Postives = 42/54 (77.78%), Query Frame = 3 
Query:    9 CEHNHYGNGDS*VXSRKVVPHTTSRGDYVPGLKVDGMDALAVKQACKFAKEHAL 170
            CE+NHYG G +   S K  P    RGDYVPGLKVDGMDALAVKQACKFAKEHAL
Sbjct:  226 CENNHYGMGTATWRSAKS-PAYFKRGDYVPGLKVDGMDALAVKQACKFAKEHAL 278
[Close]
BLAST of EL492666 vs. ExPASy Swiss-Prot
Match: ODPA1_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At1g59900 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.075e-13
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 3 
Query:    9 CEHNHYGNGDS*VXSRKVVPHTTSRGDYVPGLKVDGMDALAVKQACKFAKEHAL 170
            CE+NHYG G +   + K  P    RGDYVPGLKVDGMDA AVKQACKFAK+HAL
Sbjct:  222 CENNHYGMGTAEWRAAKS-PSYYKRGDYVPGLKVDGMDAFAVKQACKFAKQHAL 274
[Close]
BLAST of EL492666 vs. ExPASy Swiss-Prot
Match: ODPA_SOLTU (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.719e-12
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 3 
Query:    9 CEHNHYGNGDS*VXSRKVVPHTTSRGDYVPGLKVDGMDALAVKQACKFAKEHAL 170
            CE+NHYG G +   + K  P    RGDYVPGL+VDGMD  AVKQAC FAK+HAL
Sbjct:  224 CENNHYGMGTAEWRAAKS-PAYYKRGDYVPGLRVDGMDVFAVKQACTFAKQHAL 276
The following BLAST results are available for this feature:
BLAST of EL492666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ODPA_PEA1.877e-1474.07Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA2_ARATH1.877e-1474.07Pyruvate dehydrogenase E1 component subunit alpha-... [more]
ODPA1_ARATH2.075e-1368.52Pyruvate dehydrogenase E1 component subunit alpha-... [more]
ODPA_SOLTU8.719e-1262.96Pyruvate dehydrogenase E1 component subunit alpha,... [more]
back to top
Properties
Property NameValue
Genbank descriptionC5270 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC5270, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492666 ID=EL492666; Name=EL492666; organism=Citrus sinensis; type=EST; length=183bp
TTTGGTCCTGCGAACATAATCACTATGGTAATGGGGACAGCTGAGTGGAN
AGCCGCAAAGTAGTCCCTCATACTACAAGTCGTGGGGATTATGTTCCCGG
TTTGAAGGTGGATGGCATGGATGCCCTTGCTGTCAAACAAGCATGCAAGT
TTGCTAAGGAGCATGCCTTACTCAGGACTCATC
back to top