CK937718

Overview
NameCK937718
Unique NameCK937718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: Y4103_VIBPA (UPF0189 protein VPA0103 OS=Vibrio parahaemolyticus GN=VPA0103 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.231e-36
Identity = 82/160 (51.25%), Postives = 108/160 (67.50%), Query Frame = 2
Query:  152 GDISQWFVDGFSDAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFTDDLHNLW 631
            GDI+   VD    AIVN+AN RMLGGGG DGAI RAAGP L+ AC+ V +V  GIRCP G+ARIT    L A +VIH VGPIY    +P+  L SAY+ SL LA AN+ Q +A PAISCG+Y YP +EAA +A++  +       ++ F LF++++ ++W
Sbjct:    9 GDITTAHVD----AIVNAANPRMLGGGGVDGAIHRAAGPALINACYAVDDVD-GIRCPFGDARITEAGNLNARYVIHAVGPIYDKFADPKTVLESAYQRSLDLALANHCQSVALPAISCGVYGYPPQEAAEVAMAVCQRPEYAALDMRFYLFSEEMLSIW 163          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: Y3184_XANCP (UPF0189 protein XCC3184 OS=Xanthomonas campestris pv. campestris GN=XCC3184 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.826e-35
Identity = 83/154 (53.90%), Postives = 101/154 (65.58%), Query Frame = 2
Query:  152 GDISQWFVDGFSDAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY--GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFK-EVHFVL 604
            GDI+Q  VD     IVN+ANE +LGGGG DGAI RAAGP LLEAC  +PEV  G+RCPTGE RIT GF L A H+ HTVGP++  G    PE  L + Y  SL LA+   +  IAFPAISCG+Y YP  +AA IA++  +++    K   H VL
Sbjct:    8 GDITQLDVD----VIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPEVRPGVRCPTGEIRITDGFDLKARHIFHTVGPVWRDGKHNEPE-QLANCYWQSLKLAEQMMLHSIAFPAISCGIYGYPLYQAARIAVTETRDWQRSHKVPKHIVL 156          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: Y3343_XANAC (UPF0189 protein XAC3343 OS=Xanthomonas axonopodis pv. citri GN=XAC3343 PE=3 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.354e-34
Identity = 81/154 (52.60%), Postives = 101/154 (65.58%), Query Frame = 2
Query:  152 GDISQWFVDGFSDAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY--GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFK-EVHFVL 604
            GDI++  VD     IVN+ANE +LGGGG DGAI RAAGP LLEAC  +P+V  G+RCPTGE RIT GF L A H+ HTVGP++  G    PE  L + Y  SL LA+   +  IAFPAISCG+Y YP  +AA IA++  +++    K   H VL
Sbjct:    8 GDITELDVD----VIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPQVRPGVRCPTGEIRITDGFDLKARHIFHTVGPVWRDGRHNEPE-QLANCYWQSLKLAEQMMLHSIAFPAISCGIYGYPLHQAARIAVTETRDWQRSHKVPKHIVL 156          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: Y334_RALSO (UPF0189 protein RSc0334 OS=Ralstonia solanacearum GN=RSc0334 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.839e-33
Identity = 76/142 (53.52%), Postives = 100/142 (70.42%), Query Frame = 2
Query:  188 DAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSA-YKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFT 610
            DAIVN+AN  +LGGGG DGAI RAAGPELLEAC  +        C TG+A+ITPGF LPA ++IHTVGPI+      EA+L +A Y+NSL+LAK ++++ IAFP IS G+Y +P + AA IA+ TV+E   D  ++ F  F+
Sbjct:   21 DAIVNAANSALLGGGGVDGAIHRAAGPELLEACRALH------GCRTGQAKITPGFLLPARYIIHTVGPIWRGGRQDEAALLAACYRNSLALAKQHDVRTIAFPCISTGVYGFPPQLAAPIAVRTVREHGADLDDIVFCCFS 156          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: Y2219_CHLTE (UPF0189 protein CT2219 OS=Chlorobium tepidum GN=CT2219 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.403e-32
Identity = 78/141 (55.32%), Postives = 101/141 (71.63%), Query Frame = 2
Query:  188 DAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASL-RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLF 607
            DAIVN+AN  +LGGGG DGAI RAAGP+LLEAC    E+G    C TGEA+IT G++LPA+ VIHTVGP++    + EA L  S Y+NSL LA  ++ + IAFP+IS G+Y YP E+AA IAI+TV+E   D + +  V+F
Sbjct:   20 DAIVNAANTSLLGGGGVDGAIHRAAGPKLLEACR---ELG---GCLTGEAKITKGYRLPATFVIHTVGPVWHGGNHGEAELLASCYRNSLKLAIEHHCRTIAFPSISTGIYGYPVEQAAAIAITTVREMLADERGIEKVIF 154          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: MACD2_XENLA (MACRO domain-containing protein 2 OS=Xenopus laevis GN=macrod2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.139e-32
Identity = 83/172 (48.26%), Postives = 111/172 (64.53%), Query Frame = 2
Query:  152 GDISQWFVDGFSDAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYG--VTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKE----VHFVLFTDDLHNLWLKKANE 649
            GDI+Q  VD    AIVN+AN  +LGGGG DG I RA+GP LL  C    E+G    C TG+A+IT G++LPA +VIHTVGPI    +T N +  L S Y +SL+LA  N+I+ IAFP IS G+Y YP+E AA +A++TVKEF    ++    V F +F +    ++ +K NE
Sbjct:   75 GDITQLEVD----AIVNAANTSLLGGGGVDGCIHRASGPSLLAECR---ELG---GCETGQAKITCGYELPAKYVIHTVGPIARGHITPNHKQDLASCYNSSLTLATENDIRTIAFPCISTGIYGYPNEPAANVALTTVKEFLKKNRDKIDRVIFCVFLEVDFKIYKRKLNE 236          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: Y1614_METAC (UPF0189 protein MA_1614 OS=Methanosarcina acetivorans GN=MA_1614 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.920e-31
Identity = 75/142 (52.82%), Postives = 94/142 (66.20%), Query Frame = 2
Query:  188 DAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV-TINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF--ANDFKEVHFVL 604
            DAIVN+AN  +LGGGG DGAI RAAGP LLE C  +        CPTGEA+IT G+ LPA +VIHTVGPI+   T   +  L S Y+ SL LA+  +++ IAFP IS G Y +P E AA IA+S VKEF   N+  E+ F++
Sbjct:   42 DAIVNAANNTLLGGGGVDGAIHRAAGPGLLEECRTLN------GCPTGEAKITKGYLLPAKYVIHTVGPIWQEGTKGEDEFLASCYRKSLELARKYDVKTIAFPTISTGAYGFPSERAARIAVSQVKEFLKVNELPEIVFLV 177          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: YMDB_SALTY (UPF0189 protein ymdB OS=Salmonella typhimurium GN=ymdB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.010e-30
Identity = 78/166 (46.99%), Postives = 106/166 (63.86%), Query Frame = 2
Query:  152 GDISQWFVDGFSDAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASL-RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDF---KEVHFVLFTDDLHNLWLK 637
            GDI+Q  VD    AIVN+AN  ++GGGG DGAI RAAGP LL+AC  + +      C TG A ITP  KL A  VIHTVGP++    + EA L   AY+N L LA+AN+ + IAFPAIS G+Y YP  +AA +A+ TV +F   +   ++V+FV + ++   L+ +
Sbjct:   10 GDITQLSVD----AIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQG--ECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSIAFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYAR 169          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: YMDB_SALTI (UPF0189 protein ymdB OS=Salmonella typhi GN=ymdB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.010e-30
Identity = 78/166 (46.99%), Postives = 106/166 (63.86%), Query Frame = 2
Query:  152 GDISQWFVDGFSDAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASL-RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDF---KEVHFVLFTDDLHNLWLK 637
            GDI+Q  VD    AIVN+AN  ++GGGG DGAI RAAGP LL+AC  + +      C TG A ITP  KL A  VIHTVGP++    + EA L   AY+N L LA+AN+ + IAFPAIS G+Y YP  +AA +A+ TV +F   +   ++V+FV + ++   L+ +
Sbjct:   10 GDITQLSVD----AIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQG--ECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSIAFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYAR 169          
BLAST of CK937718 vs. ExPASy Swiss-Prot
Match: Y177_METMA (UPF0189 protein MM_0177 OS=Methanosarcina mazei GN=MM_0177 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.319e-30
Identity = 77/147 (52.38%), Postives = 95/147 (64.63%), Query Frame = 2
Query:  188 DAIVNSANERMLGGGGCDGAIRRAAGPELLEACHRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIY-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF--ANDFKE-VHFVLFTDD 616
            DAIVN+AN  +LGGGG DGAI RAAGP LLE C  +        CPTGEA+IT G+ LPA ++IHTVGP++ G     +  L S Y+ SL LA+   I+ IAFPAIS G Y +P E AA IA+S VKEF   N+  E V+ V +  D
Sbjct:   34 DAIVNAANNTLLGGGGVDGAIHRAAGPALLEECKTLN------GCPTGEAKITSGYLLPAKYIIHTVGPVWQGGEKGEDELLASCYRKSLELARDYKIKTIAFPAISTGAYGFPSERAAGIAVSQVKEFLQKNEIPETVYLVCYNKD 174          
The following BLAST results are available for this feature:
BLAST of CK937718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
Y4103_VIBPA1.231e-3651.25UPF0189 protein VPA0103 OS=Vibrio parahaemolyticus... [more]
Y3184_XANCP8.826e-3553.90UPF0189 protein XCC3184 OS=Xanthomonas campestris ... [more]
Y3343_XANAC3.354e-3452.60UPF0189 protein XAC3343 OS=Xanthomonas axonopodis ... [more]
Y334_RALSO2.839e-3353.52UPF0189 protein RSc0334 OS=Ralstonia solanacearum ... [more]
Y2219_CHLTE2.403e-3255.32UPF0189 protein CT2219 OS=Chlorobium tepidum GN=CT... [more]
MACD2_XENLA3.139e-3248.26MACRO domain-containing protein 2 OS=Xenopus laevi... [more]
Y1614_METAC5.920e-3152.82UPF0189 protein MA_1614 OS=Methanosarcina acetivor... [more]
YMDB_SALTY1.010e-3046.99UPF0189 protein ymdB OS=Salmonella typhimurium GN=... [more]
YMDB_SALTI1.010e-3046.99UPF0189 protein ymdB OS=Salmonella typhi GN=ymdB P... [more]
Y177_METMA1.319e-3052.38UPF0189 protein MM_0177 OS=Methanosarcina mazei GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004482_G03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937718 ID=CK937718; Name=CK937718; organism=Citrus sinensis; type=EST; length=852bp
GGGGGTGAGAAAGCCGGTGGACAGCCATTGGCATCATCCTCATCCTTGTT
CACATTTCTCACGATCTCGTTTGTTTATTCATTGGACGGCAGTTATGACT
TTCAAAGTTGCTACGCTGTCATTGTCAAGTAGTGCGCTCAAGATCAAGAA
AGGAGATATCTCTCAGTGGTTCGTTGATGGCTTTTCTGATGCAATTGTTA
ATTCAGCCAATGAGAGAATGCTTGGAGGTGGCGGTTGCGATGGAGCTATA
CGTAGGGCTGCAGGACCAGAACTTCTAGAAGCTTGTCATAGAGTTCCAGA
AGTTGGATTTGGAATCCGTTGTCCCACAGGAGAAGCAAGAATTACACCAG
GTTTTAAATTGCCTGCATCTCATGTGATTCACACTGTTGGCCCAATCTAT
GGTGTTACTATTAACCCTGAAGCTTCCCTGAGAAGTGCGTACAAGAACAG
CTTGAGCTTGGCCAAAGCGAATAACATTCAGTACATTGCTTTTCCTGCCA
TATCGTGTGGCTTATATTGTTATCCTCATGAGGAAGCCGCCACAATAGCT
ATATCTACAGTCAAAGAATTTGCTAATGACTTTAAGGAGGTGCACTTTGT
TCTGTTTACAGATGATCTCCACAATCTTTGGTTGAAGAAGGCAAATGAAT
TGCTGTCTTTTTCATCTTGAGGATGTAAAAAACTTTGAAGTTGGTACAAG
TTCAAAGTTGATGTCCTTCGAGCGACTGGTATATCAGTCTTTGGACCAAA
AAATTAGAGGGATTTTACAAGAAATAGGCTTACAAAACGCTCAAATTATG
TCAATATGCCGATTTTCTAAAATGTCAAAATTACATTTCCCATTAAACTT
CT
back to top