CK937681

Overview
NameCK937681
Unique NameCK937681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length239
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2047 contig Csv1_Contig2047:1..239. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK937681 vs. ExPASy Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.461e-14
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:  121 MPAGHGLRSRTRDLFARPCRKKGYIPLSTYLRTYKIGDY 237
            MPAGHG+R+RTRDLFARP RKKGYIPLSTYLRT+K+GDY
Sbjct:    1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDY 39
[Close]
BLAST of CK937681 vs. ExPASy Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.461e-14
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:  121 MPAGHGLRSRTRDLFARPCRKKGYIPLSTYLRTYKIGDY 237
            MPAGHG+R+RTRDLFARP RKKGYIPLSTYLRT+K+GDY
Sbjct:    1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDY 39
The following BLAST results are available for this feature:
BLAST of CK937681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RL212_ARATH1.461e-1487.1860S ribosomal protein L21-2 OS=Arabidopsis thalian... [more]
RL211_ARATH1.461e-1487.1860S ribosomal protein L21-1 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004777_D11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937681 ID=CK937681; Name=CK937681; organism=Citrus sinensis; type=EST; length=239bp
ACCCTAGAAACAAAACCTAGCTATAAATATGCTTCAGTAAGAGAGGGTTT
AAGCCCCCGCTACACACACTCACATCTCCTTCCTCTTCTNNAGAGAGAAA
AAAGGACCATTGACTCAAACATGCCGGCCGGTCACGGTTTGAGGTCCCGA
ACAAGGGATTTGTTCGCACGCCCCTGCAGAAAGAAGGGTTACATCCCCTT
GTCCACTTACCTTAGGACTTACAAAATCGGCGACTACGT
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