CK937676

Overview
NameCK937676
Unique NameCK937676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK937676_ssr555 microsatellite CK937676_ssr555:555..572. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2046 contig Csv1_Contig2046:1..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.746e-37
Identity = 73/103 (70.87%), Postives = 89/103 (86.41%), Query Frame = 2
Query:   80 SKISKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 388
            +++SKEE+E+ +NKAKEIVS+ PVVVFSKTYCGYC RVK+LL QLG +FKV+ELD  SDG +IQ+AL+EWTGQ TVPNVFI G HIGGCD V+E ++ GKLVP
Sbjct:    8 NRMSKEEMEVVVNKAKEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVP 110          
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.835e-36
Identity = 71/94 (75.53%), Postives = 79/94 (84.04%), Query Frame = 2
Query:  107 IALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 388
            +A+ K KE+VSSN VVVFSKTYC YCT VK+LL QLG  +KVVELD ESDGS+IQ ALAEWTGQRTVPNVFIGGKHIGGCD+   KH  G+LVP
Sbjct:    1 MAMTKTKELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVP 94          
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.479e-35
Identity = 70/94 (74.47%), Postives = 77/94 (81.91%), Query Frame = 2
Query:  107 IALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 388
            +A+ KAKEIV+S  VVVFSKTYC YC RVKELL+QLG  FK VELD ESDGS+IQ+ LAEWTGQRTVPNVFIGG HIGGCD     H+ GKLVP
Sbjct:    1 MAMQKAKEIVNSESVVVFSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVP 94          
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 69/94 (73.40%), Postives = 78/94 (82.98%), Query Frame = 2
Query:  107 IALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 388
            +A+ KA+E+VSSN VVVFSKT+C YCT VK+LL QLG  FKV+ELD ESDGS +Q ALAEWTGQRTVPNVFIGGKHIGGCD     HQ GKL+P
Sbjct:    1 MAMIKAQELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIP 94          
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.331e-34
Identity = 74/120 (61.67%), Postives = 90/120 (75.00%), Query Frame = 2
Query:   65 MGLFQSKISK------EELE------IALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 388
            MG+ QS  S       E+LE      +AL+KAKEIV+S+PVVVFSKTYC +C RVK LL +L  S+K VELD+ESDGS++Q+ALA+WTGQRTVP VFI GKHIGGCD  +  H+GG LVP
Sbjct:    1 MGMAQSSSSSSRPSDSEQLEEPSKPVMALDKAKEIVASSPVVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVP 120          
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.104e-33
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 2
Query:  107 IALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 388
            ++L KAKEIVS NPV VFSKTYC +C  VK+LL +LG +FK VELD E DGS+IQAALAEWTGQRTVPNVFIG KHIGGCD     H+ GKL+P
Sbjct:    1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSEKDGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLP 94          
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.320e-31
Identity = 64/94 (68.09%), Postives = 78/94 (82.98%), Query Frame = 2
Query:  107 IALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 388
            +AL KAKE V+S PVVV+SK+YC +C RVK+L +QLG +FK +ELD ESDGS++Q+ALAEWTGQRTVPNVFI GKHIGGCD  +  +  GKLVP
Sbjct:    1 MALAKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVP 94          
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.204e-20
Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  113 LNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 388
            ++K K ++ ++ +++FSKT C YC  VK+L K+L     VVELD+ESDGS++Q+A  + +G RTVP VFI  K IGGCD   + H  GKL+P
Sbjct:    1 MDKVKALIKAHKLIIFSKTTCPYCISVKDLFKKLKVVPFVVELDLESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIP 92          
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.583e-19
Identity = 42/101 (41.58%), Postives = 63/101 (62.38%), Query Frame = 2
Query:   80 SKISKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 382
            S+ S E  E    + ++++  N V++FSK+YC + TRVKEL   LG  + ++ELD   DG+ +Q  L E + Q+TVPN+F+   H+GGCD   + HQ G L
Sbjct:   99 SRPSSEAREELRRRLRDLIEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLL 199          
BLAST of CK937676 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  125 KEIVSSNPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELD-IESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 382
            K  V+ NPVVV+SKT+C Y ++VK L K L     VVELD + S+GS++Q  L + TGQ TVPNVFIGGKHIGGC   ++ H  G+L
Sbjct:   79 KTTVAENPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELDQLGSEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGEL 165          
The following BLAST results are available for this feature:
BLAST of CK937676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GRXC1_ARATH2.746e-3770.87Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_RICCO8.835e-3675.53Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC2_ARATH7.479e-3574.47Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GLRX_VERFO1.666e-3473.40Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GRXC4_ORYSJ6.331e-3461.67Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GLRX_SOLLC4.104e-3371.28Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GRXC6_ORYSJ1.320e-3168.09Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GLRX_DICDI5.204e-2048.91Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
TRXR3_MOUSE2.583e-1941.58Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
GRS12_ARATH4.405e-1955.17Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004777_D07 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937676 ID=CK937676; Name=CK937676; organism=Citrus sinensis; type=EST; length=662bp
GCGGGAGTGGTAANNNACAATACCAAACAACAAAGGAAAGGATCGAAAAC
TAAAATCAAGTCAAATGGGTTTATTTCAAAGCAAAATAAGCAAAGAAGAG
CTTGAAATCGCGCTTAACAAGGCCAAGGAAATCGTCTCCTCCAATCCCGT
CGTCGTCTTCAGCAAAACCTACTGTGGTTATTGTACAAGGGTGAAGGAGT
TGCTTAAACAGCTTGGAACGAGTTTCAAAGTCGTAGAATTGGATATTGAA
AGTGATGGAAGTAAAATTCAAGCAGCTCTGGCAGAGTGGACTGGGCAGAG
AACCGTACCCAATGTGTTCATTGGGGGAAAACACATCGGTGGCTGCGACA
CTGTAGTAGAGAAGCACCAAGGAGGAAAGCTGGTCCCCCTTCTTCGTGAT
GCCGGTGCCCTCGCCCTTGCTGACAAATGATAATTTTGCTCCGTTAAGAT
CAGAACCACAAGTTCGTGTACATGGGCTGAAGTGAAGAAATGCAACAATA
TTAAAGTGACCAATTATATGGTGTGTAAAAGTAACAATCGATGTCCACTT
TATTTGTGTGTGTGTGTGTGTGTTTTATAGACATTTCTCTGCTTGATTGT
AAAGTAAAATGAGAGATATGCATGCGTTGCTGCTCTCTGTATAAGGAGGG
AAGCATTCGACC
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