CX675353

Overview
NameCX675353
Unique NameCX675353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675353 vs. ExPASy Swiss-Prot
Match: ECA4_ARATH (Calcium-transporting ATPase 4, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA4 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.200e-26
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 3
Query:   63 MEQGSLIGESETINKTNKIVPLDTYIQGKKCMFFAGITIVNGNCVCLVIQIRMKTEIGKVHRQIYVASQSEEDTSLKR 296
            +EQGSL GESE ++KT K V  +  IQGKKCM FAG T+VNGNC+CLV    M TEIG+VH QI  A+Q EEDT LK+
Sbjct:  199 VEQGSLTGESEAVSKTTKHVDENADIQGKKCMVFAGTTVVNGNCICLVTDTGMNTEIGRVHSQIQEAAQHEEDTPLKK 276          

HSP 2 Score: 36.1946 bits (82), Expect = 4.200e-26
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 2
Query:  287 VEKKLNDFGEVLTKMIGVICVL 352
            ++KKLN+FGEVLT +IG+IC L
Sbjct:  274 LKKKLNEFGEVLTMIIGLICAL 295          

HSP 3 Score: 22.3274 bits (46), Expect = 4.200e-26
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 1
Query:  352 VWLINFKYF 378
            VWLIN KYF
Sbjct:  296 VWLINVKYF 304          
BLAST of CX675353 vs. ExPASy Swiss-Prot
Match: ECA1_ARATH (Calcium-transporting ATPase 1, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA1 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.200e-26
Identity = 49/78 (62.82%), Postives = 58/78 (74.36%), Query Frame = 3
Query:   63 MEQGSLIGESETINKTNKIVPLDTYIQGKKCMFFAGITIVNGNCVCLVIQIRMKTEIGKVHRQIYVASQSEEDTSLKR 296
            +EQGSL GESE ++KT K V  +  IQGKKCM FAG T+VNGNC+CLV    M TEIG+VH QI  A+Q EEDT LK+
Sbjct:  199 VEQGSLTGESEAVSKTTKHVDENADIQGKKCMVFAGTTVVNGNCICLVTDTGMNTEIGRVHSQIQEAAQHEEDTPLKK 276          

HSP 2 Score: 36.1946 bits (82), Expect = 4.200e-26
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 2
Query:  287 VEKKLNDFGEVLTKMIGVICVL 352
            ++KKLN+FGEVLT +IG+IC L
Sbjct:  274 LKKKLNEFGEVLTMIIGLICAL 295          

HSP 3 Score: 22.3274 bits (46), Expect = 4.200e-26
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 1
Query:  352 VWLINFKYF 378
            VWLIN KYF
Sbjct:  296 VWLINVKYF 304          
BLAST of CX675353 vs. ExPASy Swiss-Prot
Match: ECA2_ARATH (Calcium-transporting ATPase 2, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.223e-16
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 3
Query:   48 THSF*MEQGSLIGESETINK-TNKIVPLDTYIQGKKCMFFAGITIVNGNCVCLVIQIRMKTEIGKVHRQIYVASQSEEDTSLKR 296
            T +  +EQ SL GE+  + K  N +V  D  +QGK+ M FAG T+VNG+CVC+V  I M TEIGK+ RQI+ AS  E +T LK+
Sbjct:  177 TSTLRVEQSSLTGEAMPVLKGANLVVMDDCELQGKENMVFAGTTVVNGSCVCIVTSIGMDTEIGKIQRQIHEASLEESETPLKK 260          

HSP 2 Score: 27.335 bits (59), Expect = 1.223e-16
Identity = 11/22 (50.00%), Postives = 17/22 (77.27%), Query Frame = 2
Query:  287 VEKKLNDFGEVLTKMIGVICVL 352
            ++KKL++FG  LT  I ++CVL
Sbjct:  258 LKKKLDEFGSRLTTAICIVCVL 279          

HSP 3 Score: 21.1718 bits (43), Expect = 1.223e-16
Identity = 8/16 (50.00%), Postives = 11/16 (68.75%), Query Frame = 1
Query:  352 VWLINFKYFKDEDGVE 399
            VW+IN+K F   D V+
Sbjct:  280 VWMINYKNFVSWDVVD 295          
BLAST of CX675353 vs. ExPASy Swiss-Prot
Match: ECAP_SOLLC (Calcium-transporting ATPase, endoplasmic reticulum-type OS=Solanum lycopersicum GN=LCA1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.584e-16
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 3
Query:   63 MEQGSLIGESETINK-TNKIVPLDTYIQGKKCMFFAGITIVNGNCVCLVIQIRMKTEIGKVHRQIYVASQSEEDTSLKR 296
            +EQ SL GES  + K T+ +   D  +Q K+ M FAG T+VNG+C+C+V+   M TEIGK+ RQI+ AS  E DT LK+
Sbjct:  181 VEQSSLTGESMPVTKSTDFLATDDCELQAKENMVFAGTTVVNGSCICIVVNTGMCTEIGKIQRQIHDASMEESDTPLKK 259          

HSP 2 Score: 28.1054 bits (61), Expect = 1.584e-16
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 2
Query:  287 VEKKLNDFGEVLTKMIGVICVL 352
            ++KKL++FG  LT  IGV+C++
Sbjct:  257 LKKKLDEFGNRLTFAIGVVCLV 278          

HSP 3 Score: 21.9422 bits (45), Expect = 1.584e-16
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = 1
Query:  352 VWLINFKYF 378
            VW IN+KYF
Sbjct:  279 VWAINYKYF 287          
The following BLAST results are available for this feature:
BLAST of CX675353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ECA4_ARATH4.200e-2662.82Calcium-transporting ATPase 4, endoplasmic reticul... [more]
ECA1_ARATH4.200e-2662.82Calcium-transporting ATPase 1, endoplasmic reticul... [more]
ECA2_ARATH1.223e-1650.00Calcium-transporting ATPase 2, endoplasmic reticul... [more]
ECAP_SOLLC1.584e-1649.37Calcium-transporting ATPase, endoplasmic reticulum... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_61F11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61F11-L21-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675353 ID=CX675353; Name=CX675353; organism=Citrus sinensis; type=EST; length=798bp
AAACGATGGGCCATCAATCTAGAGCTTAATCCTGGAACAATTCAACGACA
CACTCGTTCTGAATGGAACAAGGGTCGTTGATCGGAGAGAGTGAGACAAT
TAACAAAACGAACAAAATCGTTCCTTTAGATACATATATTCAAGGGAAAA
AATGTATGTTTTTTGCTGGGATCACTATTGTGAATGGGAACTGTGTGTGT
TTGGTTATACAGATTAGAATGAAGACTGAGATTGGGAAAGTGCATAGGCA
AATTTATGTTGCTTCGCAGAGCGAAGAGGATACCTCGTTGAAAAGAAACT
GAATGATTTTGGGGAGGTTTTGACCAAGATGATTGGAGTTATTTGTGTTT
TGTATGGTTAATTAATTTTAAGTATTTTAAAGATGAAGATGGTGTTGAGT
GTTGTTCACGTGAAAGAGAAAGCAGATTGAAATGATTATGTTTTCTTTTA
TCTTCTTTTGTCCAGTGGTTATTATAAAATTCTGGTTAATAGAGTAAACT
CTTACATATATATCAGACATCAAGAAACACAAAGCTTCACTTTTGAATTC
TTTTGAATTTAAAATTTTTTTTACACATTTACCCTTATATGTTGATTCCA
TACGTATTTGGATACTAACGACAGGGGAGGTGTTTGTAATTACGTGGATA
CATTCTCTTTGAGTGTTAATACGCCAAATTTCAGGGGAAATCCCTAAAAA
TAATCCTTAAATGATATGTTAAGACACGACTCANGACTAATATTTTACAA
TCCCTAAAGGGATTTTGAACGATGCAATAAAATGAACTATTGGTGTCT
back to top